Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5173
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0874 - 22202699-22203070,22204239-22204874                       31   0.68 
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558...    30   1.6  
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893...    30   1.6  
11_01_0794 + 6989069-6989300,6989893-6989966,6990303-6990372,699...    29   2.1  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    29   3.6  
02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178           29   3.6  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    28   6.3  
02_02_0381 + 9573651-9574174,9574271-9574583                           27   8.3  

>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = -1

Query: 395 PIIPTDVPIQFKRIPFPITLAFAMTINKSQGQTMSVCGLDLSTPCFSHGQLYVACSRVGK 216
           P   TDVP       +P++ A +     S G T   C LDLS   F  G +  AC   G 
Sbjct: 17  PSAATDVP------SYPLSQAQSPANTSSGGSTSPPCHLDLSAELF--GGVAAACGAGGG 68

Query: 215 PSSL 204
           P SL
Sbjct: 69  PGSL 72


>10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,
            5587181-5587234,5587309-5588214,5588313-5590283,
            5590833-5591235,5591845-5591857
          Length = 1321

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -3

Query: 570  HISLQLKVESPIILLRNLNPA 508
            HI L+LK+  P+ILLRN++PA
Sbjct: 1291 HI-LKLKINCPVILLRNIDPA 1310


>02_05_1183 +
           34788219-34788533,34788733-34788930,34789010-34789359,
           34789463-34789619
          Length = 339

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 254 HGQLYVACSRVGKPSSLFVLAKDGLTKNIVHAAA 153
           HG  +VAC    +   L  +A DG T+N+++AAA
Sbjct: 91  HGVFHVACPLSNRDPELMAVAVDG-TRNVMNAAA 123


>11_01_0794 +
           6989069-6989300,6989893-6989966,6990303-6990372,
           6991099-6991280
          Length = 185

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 570 HISLQLKVESPIILLRNLNP 511
           HI L+LKV  P+ILLRNL+P
Sbjct: 33  HI-LKLKVNCPVILLRNLDP 51


>03_05_0351 - 23382786-23382821,23383373-23383634,23384369-23385675,
            23385776-23386290,23386379-23386741,23386916-23387284,
            23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -3

Query: 561  LQLKVESPIILLRNLNPA 508
            L+LK+  PI+LLRN++PA
Sbjct: 1258 LKLKINCPIMLLRNIDPA 1275


>02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178
          Length = 306

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -3

Query: 561 LQLKVESPIILLRNLNPA 508
           L+LK+  PI+LLRN++PA
Sbjct: 184 LKLKINCPIMLLRNIDPA 201


>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
            25335559-25335624,25335717-25336685,25336791-25336912,
            25337156-25337549,25337888-25338009,25338253-25338646,
            25338983-25339104,25339348-25339830,25340291-25340960,
            25341713-25342224,25342484-25342540
          Length = 1581

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 561  LQLKVESPIILLRNLNP 511
            L++KV  P+ILLRNL+P
Sbjct: 1514 LKVKVNCPVILLRNLDP 1530


>02_02_0381 + 9573651-9574174,9574271-9574583
          Length = 278

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 466 IIFLMTNRVPLLSRGGVQITKQNNWRFNLQL 558
           II +M  RVP + +GGV+ T   +  FNL L
Sbjct: 168 IIPVMYQRVPCVKKGGVRFTINGHDYFNLVL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,248
Number of Sequences: 37544
Number of extensions: 295768
Number of successful extensions: 592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)