Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5173
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   0.72 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.72 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 327 CKCQCNRKWNTLK 365
           CKC C R+ NTL+
Sbjct: 78  CKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 327 CKCQCNRKWNTLK 365
           CKC C R+ NTL+
Sbjct: 526 CKCFCKRRTNTLR 538


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 327 CKCQCNRKWNT 359
           CKC  +R WNT
Sbjct: 765 CKCYNDRTWNT 775


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 488 RLVIKKIMKKVNEGTILNGKFRGENILIPRIPII 387
           + + KKI K +    I       E+ LI R PI+
Sbjct: 115 KFISKKIKKTMENKDITKRPLPNESQLIKRHPIV 148


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 172 FFVSPSLANTNKLDGLPTRE 231
           F++ PSL    K   LPT E
Sbjct: 173 FYIYPSLQGDGKFHLLPTGE 192


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 172 FFVSPSLANTNKLDGLPTRE 231
           F++ PSL    K   LPT E
Sbjct: 173 FYIYPSLQGDGKFHLLPTGE 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,832
Number of Sequences: 438
Number of extensions: 3928
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)