Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5172
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    24   7.1  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    23   9.4  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    23   9.4  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 31  YYKNYGDFEHFYHEYHKIQRRR 96
           Y+KNY   E  + + H I R R
Sbjct: 285 YFKNYDSLERHFEKDHYICRER 306


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 7   IFRKYSILYYKNYGDFE 57
           I+ K  ILY+K YG F+
Sbjct: 116 IYTKKQILYFKCYGTFK 132


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 273 PDGVGSFLLNP 241
           PDG  SFL+NP
Sbjct: 109 PDGTASFLINP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,436
Number of Sequences: 5004
Number of extensions: 21405
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)