Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5172
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1439 + 37374739-37375473 29 0.93
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 28 1.6
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 28 2.2
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038 28 2.2
07_03_1355 - 25976951-25977289,25977413-25977721 27 2.9
02_05_0084 - 25690346-25691206 27 2.9
05_03_0565 - 15509949-15511304 27 3.8
01_06_0851 + 32455364-32458050,32458883-32458922 27 3.8
03_02_0688 + 10422337-10422873 27 5.0
12_02_0403 - 18627246-18627557,18627904-18628836 26 6.6
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 26 6.6
05_04_0234 + 19282196-19282818,19282948-19283347 26 6.6
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979... 26 6.6
04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019 26 6.6
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 26 8.7
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094... 26 8.7
06_01_0612 - 4429605-4431152 26 8.7
>01_06_1439 + 37374739-37375473
Length = 244
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 297 PYPAPPSAPDGVGSFLLNPQL*SLRAVAGPP 205
P PAP +AP V NP+ S RA PP
Sbjct: 23 PPPAPATAPPWVWPSCKNPRTQSFRAATAPP 53
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 180 VQRSRRPRPAVLRQHAMIKAED*EEKSRHRPAPTEE 287
V +R PRPA +R+ A+ AE ++ R PTEE
Sbjct: 29 VMATRAPRPAFIRREAIRAAEAAADEVVLRVQPTEE 64
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 180 VQRSRRPRPAVLRQHAMIKAED*EEKSRHRPAPTEE 287
V +R PRPA +R A AE + R APTEE
Sbjct: 30 VMATRTPRPASIRPEATRAAEAAAREVLLRVAPTEE 65
>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
Length = 370
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 327 RSSSPRTFLVPYPAPPSAPDGV-GSFLLNPQL*SLRAVAGPPGEDVA 190
+ SS R+F YPAPP PD + G+ L P + R G E A
Sbjct: 59 KMSSRRSFR--YPAPPPTPDVLAGALLSGPDPDAARTAVGAAAESGA 103
>07_03_1355 - 25976951-25977289,25977413-25977721
Length = 215
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = +2
Query: 248 RRKEPTPSGADGGAG--YGT 301
RR+ PTP GADGG YGT
Sbjct: 153 RREGPTPGGADGGEPRYYGT 172
>02_05_0084 - 25690346-25691206
Length = 286
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 312 RTFLVPYPAPPSAPDGVGSF 253
R F V YP PP+A GVG F
Sbjct: 191 RLFDVVYPPPPAAVGGVGMF 210
>05_03_0565 - 15509949-15511304
Length = 451
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 157 RARGHPKVCSARDVLARRS 213
R RGHP V + DVLA RS
Sbjct: 93 RVRGHPHVVALLDVLATRS 111
>01_06_0851 + 32455364-32458050,32458883-32458922
Length = 908
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 LYLENIRFYITKI-MVISNIFIMNITKFRGGDIKLYS*NN 121
L+ I++ IT I + NI+I N T F+G D+ ++ NN
Sbjct: 335 LHFCEIQYPITMINQRVFNIYINNQTAFQGADVIAWTNNN 374
>03_02_0688 + 10422337-10422873
Length = 178
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 159 SEGPPEGVQRSRRPRPAVLRQHAMIKAED*EEKSRH 266
+EG G +R R R AV R H I AE EE + H
Sbjct: 144 AEGKATGCKRRRSVRAAVWRPHLQIIAE--EEDAAH 177
>12_02_0403 - 18627246-18627557,18627904-18628836
Length = 414
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 267 GVGSFLLNPQL*SLRAVAGPPGEDVASAAHLRVA 166
G G F+ NP + PP E +A+++H R A
Sbjct: 121 GCGIFVTNPVTGETLHIPSPPLETMATSSHRRTA 154
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 330 QRSSSPRTFLVPYPAPPSAPDGVGSFLLNPQ 238
Q+ S+ R LV P PS P G S ++ PQ
Sbjct: 543 QQGSNQRPRLVTGPQAPSYPQGGSSSVVRPQ 573
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 297 PYPAPPSAPDGVGSFL 250
P P PPS DGVGS +
Sbjct: 78 PTPTPPSPSDGVGSIV 93
>04_03_0965 -
21296608-21297165,21297332-21297682,21297781-21297965,
21298076-21298172,21298859-21299071,21299206-21299334,
21299442-21299567,21301280-21301999
Length = 792
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 248 LILSFNHCVLSQDRRARTSRALHTFGWPLARA 153
L L C L QDRRA R + G P ARA
Sbjct: 114 LDLMRRQCALMQDRRAAGGRHVRDDGGPGARA 145
>04_01_0334 - 4395823-4395830,4398575-4399658,4401651-4402019
Length = 486
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 272 GADGGAGYGTRKVRGELERW 331
GA G Y R+ RGE+ERW
Sbjct: 58 GAGLGRSYIPRRERGEVERW 77
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 150 VSASEGPPEGVQRSRRPRPAVLR 218
+SA EGP +G Q R P P +R
Sbjct: 1294 LSALEGPGQGKQAPRPPAPTAVR 1316
>08_02_0797 +
21307534-21307639,21307907-21308988,21309385-21309432,
21309705-21310217
Length = 582
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 251 RKEPTPSGADGGAGYGTRKVRGELERW 331
R+ +P G G G R+++GEL R+
Sbjct: 278 RQSKSPHGGHGSGGRSDRQLQGELVRY 304
>06_01_0612 - 4429605-4431152
Length = 515
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 324 SSSPRTFLVPYPAPPSAPDGVGS 256
S S R +P+PA P P GV S
Sbjct: 80 SPSVRVVAIPFPAHPQIPPGVES 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,659
Number of Sequences: 37544
Number of extensions: 179096
Number of successful extensions: 784
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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