Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5172
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    28   1.4  
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AF040643-3|AAB94959.1|  128|Caenorhabditis elegans Hypothetical ...    27   2.5  
U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family ...    27   3.3  
Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z54271-2|CAA91033.1|  309|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 303 LVPYPAPPSAPDGVGSFLLNPQ 238
           L P P  P+AP   G FLL+P+
Sbjct: 433 LKPMPTVPTAPQTTGQFLLSPE 454


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 297 PYPAPPSAPDGVGSFLLNPQ 238
           P P  P+AP   G FLL+P+
Sbjct: 435 PMPTVPTAPQTTGQFLLSPE 454


>AF040643-3|AAB94959.1|  128|Caenorhabditis elegans Hypothetical
           protein F14D2.5 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 245 LRRKEPTPSGADGGAGYGT 301
           L ++EP   G DGG+G GT
Sbjct: 109 LHKREPRDDGGDGGSGSGT 127


>U38377-3|AAA79748.1|  652|Caenorhabditis elegans Cohesin family
           protein 1 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 327 RSSSPRTFLVPYPAPPSAP 271
           RS +P TF  P PAP  AP
Sbjct: 328 RSDTPNTFRAPSPAPSIAP 346


>Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical
           protein T04H1.6 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 297 PYP-APPSAPDGVGSFLLNPQL*SLRAVAGP-PGEDV 193
           PYP   PSA  G G ++ NPQ  S+  V  P P  DV
Sbjct: 31  PYPYVQPSASSGSGGYVPNPQS-SIHTVQQPYPNIDV 66


>Z54271-2|CAA91033.1|  309|Caenorhabditis elegans Hypothetical
           protein F21D5.2 protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 4   LIFRKYSILYYKNYGDFEHFYHEYHKIQRRRYKIIFL 114
           +IF K +I+ YK YG       EY   + R  +++FL
Sbjct: 258 MIFEK-TIVVYKQYGGRHTIGEEYSSPKDRALRVVFL 293


>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 333 FQRSSSPRTFLVPYPAPPSAPDGVGS 256
           F  SS+P  FL P+PAP  A    G+
Sbjct: 425 FPTSSTPSRFLNPFPAPLPAESFFGN 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,172,734
Number of Sequences: 27780
Number of extensions: 139688
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)