Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5172
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   3.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   4.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    20   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.2  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 34  YKNYGDFEHFYHEYHKIQRRRYKIIFLE 117
           Y NY ++ + Y+ Y+K  +  Y I ++E
Sbjct: 91  YSNYNNYNNNYNNYNK--KLYYNINYIE 116


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 58  HFYHEYHKIQRRRYKIIF 111
           HFYH+  +I+  R +I+F
Sbjct: 154 HFYHKELQIELVREEILF 171


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +1

Query: 19  YSILYYKNYGDFEHFYHEYHKIQRRRYKIIF 111
           Y    Y NY +  + Y+ Y+      YK ++
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLY 352


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 300 VPYPAPPSAPDGVGSFLLNP 241
           +P P P   P   G+FL  P
Sbjct: 111 IPVPVPIPVPVYYGNFLPRP 130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 327  RSSSPRTFLVPYPAPPSAPDGVGSFLLNPQL 235
            + SSP T L+   APP+   G  S     QL
Sbjct: 1255 KDSSPATALMLQHAPPAYSCGTVSVPQQQQL 1285


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 254 FFLILSFNHCV 222
           +FL++SF +C+
Sbjct: 309 WFLLMSFGYCI 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,193
Number of Sequences: 438
Number of extensions: 2067
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)