Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5170
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   0.78 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   1.4  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    27   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    27   3.1  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   3.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.5  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    26   5.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   5.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   5.5  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   7.3  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.6  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    25   9.6  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 621 QYLHHSQISL*KTAWNLCNKTPFPSSPKQGRLIMTQ 514
           Q L H  +SL + + N+  + P P  P+Q  +I+T+
Sbjct: 233 QQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEIIITK 268


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 57  IEKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTTEKHSKTSLDGRVGFIL 224
           I  + E    G  P WDE+++AL F   Q     K +P T + + T    R  F L
Sbjct: 516 ISAVDESAHQGHLPGWDEKEEALIFSLAQGMNPMK-MPLTPRRASTGPRPRPTFQL 570


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 NFERNKASLYKLDSAKDGKLEKIIETVSLSNGL 536
           N E  K  + K     +G L+  +ET++L NGL
Sbjct: 74  NNEYRKTDVVKNSDTDNGLLKSAVETITLENGL 106


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 307 LPSSPSHCIKRNLRSTPTTNWSVVPSTGNMKPTLPSKL 194
           LPS PS       R TP T  +++P  G M    P K+
Sbjct: 509 LPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKV 546


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 TWRIFMTHSSSKQPPTRICFA 375
           T+R F T SS+K P   +CFA
Sbjct: 21  TFRKFTTESSTKSPIADVCFA 41


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +3

Query: 6   FSRLNSAAF*PYTMSVRIEKITEPL--TLGEGPHWDERQQALYFVSIQDKTIHKYVPTTE 179
           F  ++  AF  YT  ++ +   E +  TL EGP W       Y     D  I   VPT E
Sbjct: 363 FLSVSPPAFSEYTSELQKKSKQELIDPTL-EGPRWTVSDPPTYAKQTIDSNICVLVPTAE 421

Query: 180 KH 185
           K+
Sbjct: 422 KN 423


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 292  SHCIKRN--LRSTPTTNWSVVPSTGNMKPTLPSKLV 191
            SH    N  + + P  N S VP+TGN+K  L    V
Sbjct: 1095 SHAAHSNNVIGTQPHVNVSAVPNTGNLKDALEGSAV 1130


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +3

Query: 399  LFAGTMGHEDP---PGNFERNKASLYKLDSAKDGK----LEKIIETVSLS 527
            L    +G E+P   PGNF  +  SLY++  +  G+     E+++ET++ S
Sbjct: 1517 LLRTAVGGENPMALPGNFVNSITSLYEISESFSGETKQAYEQLVETMNKS 1566


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 120 ALYFVSIQDKTIHKYVPTTEKHSKTSLDGRVGFILPVEGTTDQFVV 257
           A+   +I+ K + K V  + K  K SL+  +   LP+EGT   F V
Sbjct: 295 AINLSAIKSKHLQKIVVLSSK-GKVSLESPMSPSLPIEGTFRSFRV 339


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 403 LLELWVMKILQVTLRETKPPFTNWIQLKMGN*RRLSKLCHYQTALLG 543
           LL LW + +    L +T+P  T  +  K G  R  + +C Y  A  G
Sbjct: 103 LLFLWAIVMNMDALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAFGG 149


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 124 YTL*ASKIKLYTNMYQLLKNI 186
           Y + A+K K +T  YQLLKNI
Sbjct: 717 YHVSATKKKEFTRQYQLLKNI 737


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 196 LVFECFSVVGTYLCIVLSWMLTKYS 122
           ++F C  V+   L ++LSW  T+YS
Sbjct: 248 ILFACQLVLDLALLLILSWGYTRYS 272


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 313 TLLPSSPSHCIKRNLRSTPTTNWSVVPSTGN 221
           T+LP   +  I    +ST TTN S  P+TG+
Sbjct: 441 TMLPIPGTRRIPTYSQSTSTTNPSATPTTGD 471


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 552 EKAFYYTDSMQFSITKFDYDVDTGEISNPRNIFDF 656
           E+ FY  DSM F + K +  VDT  + + R++ ++
Sbjct: 321 EQLFYVMDSMGFEVLKHN-SVDTTYMGDKRSMLEW 354


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 585 TAWNLCNKTPFPSSPKQ 535
           T WN  +KT  PSSP++
Sbjct: 197 TCWNRDDKTDMPSSPRE 213


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 547 KSQARPFDNDTVSII 503
           K Q +PFD+DT+SI+
Sbjct: 82  KVQTKPFDSDTLSIL 96


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 527 KRPCLGLEGKGVLLHRFH 580
           ++PCL  +GKGV  H  H
Sbjct: 161 EKPCLSCDGKGVKQHLKH 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,025
Number of Sequences: 5004
Number of extensions: 65948
Number of successful extensions: 194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)