Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5170
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 30 1.9
03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130... 29 3.3
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 29 3.3
03_02_0087 + 5553730-5553842,5555221-5555353,5555887-5556023,555... 28 5.7
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 27 9.9
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339... 27 9.9
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 237 TTDQFVVGVER-KFLLIQWDGEDGSKVAVLKELGEVDK--DRPNNRINDGKADPRGRL 401
T D + ER KF ++QWDGE + + +G+V RP + G DP RL
Sbjct: 272 TQDFLFIATERYKFCVLQWDGEKSE--LLTRAMGDVSDRIGRPTDNGQIGIIDPDCRL 327
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 303 GSKVAVLKELGEVDKDRPNNRIN 371
G KVA K+L DKDRP+++ N
Sbjct: 8 GGKVAEPKDLAATDKDRPSSKKN 30
>03_02_0790 -
11212540-11212698,11212777-11212873,11212974-11213030,
11213291-11213379,11213463-11213549,11213820-11213935,
11214026-11214281,11214361-11214510,11214948-11215106,
11215456-11215493,11215972-11216063,11216528-11216682,
11217185-11217253
Length = 507
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 343 TKTDLITGLMMAKQILVGGCLLELWVMKILQVTLRETKPPFTNWIQL 483
TKT L ++ L GCL ++ K+ ++T + P+T+WI +
Sbjct: 358 TKTKLYIKALIVSIALTAGCLWYEYIYKLDKITYNKYH-PYTSWIPI 403
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 423 EDPPGNFERNKASLYK-LDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITK 599
E+ G E +A L K L + G+ EK +E + ++ G + +K ++Q +
Sbjct: 91 EENLGESEVREAHLAKSLYFMRVGEKEKALEQLKVTEGKTVAVGQKMDLVFYTLQIGLFH 150
Query: 600 FDYDVDTGEISNPRNIFD 653
D+D+ + I +N+F+
Sbjct: 151 MDFDLISKSIDKAKNLFE 168
>03_02_0087 +
5553730-5553842,5555221-5555353,5555887-5556023,
5556254-5556311,5556403-5556642
Length = 226
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = -2
Query: 283 IKRNLRSTPTTNW--SVVPS---TGNMKPTL--PSKLVFECFSVVGTYLCIVLSWMLTKY 125
+ ++L S P ++ VVP+ T +K L P KLV S +C W+L K
Sbjct: 140 LSKSLLSKPQHHYITRVVPNFHGTFQLKVVLKEPLKLVENLLSSADILVCNTHPWLLAKS 199
Query: 124 SAC*RSS----QWGPSPSVRGSVIFS 59
SA R++ + PSV G+++FS
Sbjct: 200 SALTRANCGAVIYHTDPSVDGTLLFS 225
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 300 DGSKVAVLKELGEVDKDRPNNRINDGKADPRGRLFA-GTMGHEDPPGNFERNKASLYKL 473
+G +V LG V D P ++ L A T GHEDP N+A LY+L
Sbjct: 465 NGEEVENDDGLGLVQSDTPLAPVDGQNMQSASNLTAFSTYGHEDP-NMHPSNEAQLYRL 522
>03_06_0641 -
35232858-35232892,35233066-35233290,35233785-35233929,
35234295-35234406,35234477-35234535,35234981-35235022,
35235372-35235434,35235636-35235697,35236298-35236451,
35236572-35236651,35237646-35237709,35237791-35237959,
35238002-35238114,35238361-35238507
Length = 489
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 60 EKITEPLTLGEGPHWDERQQALYFVSIQDKTIHKYVPTTEKHSKTSLDGRVGFIL 224
EKI + LGE DE Q+ + K + PT++ T+ D R+ F+L
Sbjct: 234 EKIKKAEELGEQGMVDEAQKVMEEAEALKKLAARREPTSDPTKYTAADVRIKFML 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,511
Number of Sequences: 37544
Number of extensions: 406660
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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