Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5170
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 2.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 2.2
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical pr... 28 5.1
X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein. 28 5.1
X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein. 28 5.1
U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical p... 27 8.9
U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 441 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 620
F + LY+L+ + K + + G+ +D ++ ++TD + S D D D
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456
Query: 621 GEISNPRNI 647
GEIS + +
Sbjct: 457 GEISQIKKL 465
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 441 FERNKASLYKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFDYDVDT 620
F + LY+L+ + K + + G+ +D ++ ++TD + S D D D
Sbjct: 398 FVARREGLYRLNPKNPDEEVKKLASGEFIYGIDFDYGDRKIFWTDRLAHSAFSADVD-DE 456
Query: 621 GEISNPRNI 647
GEIS + +
Sbjct: 457 GEISQIKKL 465
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 196 LVFECFSVVGTYLCIVLSWMLTKYSAC*RSSQWGPSPSVRGSVI 65
L F CF T LC + + LT + R +W P + +VI
Sbjct: 141 LHFNCFDAYATKLCYLCYYTLTVLWSLVRGKKWNPLRERKDTVI 184
>Z81552-2|CAB04485.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.3 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 144 DKTIHKYVPTTEKHSKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LLIQWDGEDGSK 311
+KTI+ + PTTEK +T +V FI + G + +G E +I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 312 VAVLKELGEVDKD 350
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>Z81552-1|CAB04484.1| 331|Caenorhabditis elegans Hypothetical
protein F56G4.2 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 144 DKTIHKYVPTTEKHSKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LLIQWDGEDGSK 311
+KTI+ + PTTEK +T +V FI + G + +G E +I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 312 VAVLKELGEVDKD 350
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>X94702-1|CAA64363.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 144 DKTIHKYVPTTEKHSKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LLIQWDGEDGSK 311
+KTI+ + PTTEK +T +V FI + G + +G E +I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 312 VAVLKELGEVDKD 350
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>X94701-1|CAA64362.1| 331|Caenorhabditis elegans pes-2 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 144 DKTIHKYVPTTEKHSKTSLDGRVG--FILPVE-GTTDQFVVGVERKF-LLIQWDGEDGSK 311
+KTI+ + PTTEK +T +V FI + G + +G E +I W E
Sbjct: 103 EKTINIFWPTTEKEDRTFAVMKVAEHFIYTLGLGEFESVTLGQENHAGRIIDWANEKNLN 162
Query: 312 VAVLKELGEVDKD 350
+A +G VDK+
Sbjct: 163 IANF-TIGNVDKE 174
>U88167-10|AAB42222.1| 804|Caenorhabditis elegans Hypothetical
protein D2092.1a protein.
Length = 804
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 465 YKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFD 605
Y L++A D ++ TVS S+G ++ F Y D I K+D
Sbjct: 319 YHLENAPDDAQVLLLITVSGSHGAGETIETDEFNYNDIRNTRIQKYD 365
>U88167-9|AAK68288.1| 890|Caenorhabditis elegans Hypothetical
protein D2092.1b protein.
Length = 890
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 465 YKLDSAKDGKLEKIIETVSLSNGLAWDLKEKAFYYTDSMQFSITKFD 605
Y L++A D ++ TVS S+G ++ F Y D I K+D
Sbjct: 405 YHLENAPDDAQVLLLITVSGSHGAGETIETDEFNYNDIRNTRIQKYD 451
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,125,656
Number of Sequences: 27780
Number of extensions: 358805
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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