Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5170
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
 Frame = +3

Query: 399 LFAGTMGHEDPPGNFERNKASLY--KLDSAKDGKLEKIIETVSLS----NGLAWDLKEKA 560
           +   T G+ DPP N E    +LY  K++        KI    S S    N        K 
Sbjct: 519 VITSTFGNGDPPENGEAFAQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKK 578

Query: 561 FYYTDSMQFSITKFDYDVDTGEISNPR 641
               DS++ S T    + + G +SN R
Sbjct: 579 LDRLDSLRGSTTDSQTEDNFGPLSNVR 605


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 195  SLDGRVGFILPVEGTTDQFVVGVE 266
            ++ GRVGF+ P E     F+ G++
Sbjct: 975  NVQGRVGFVTPFEHR--HFISGID 996


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,879
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)