Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5166
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 74 9e-15
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 42 4e-05
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 42 6e-05
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 32 0.037
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.26
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.26
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 28 0.81
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 1.9
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 3.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 4.3
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 25 5.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.5
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 25 7.5
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.5
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 24 9.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 9.9
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 24 9.9
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 24 9.9
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 74.1 bits (174), Expect = 9e-15
Identities = 32/56 (57%), Positives = 42/56 (75%)
Frame = +1
Query: 295 LDGIGRWIKSDRCKKIITLSGAGISTCAGIPDFRSPETGLYHNLQKYELPQPQAIF 462
L+ + IK + KKI + GAGIST AGIPDFRSPETG+Y+NLQ++ LP +A+F
Sbjct: 15 LEKVASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVF 70
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 328 RCKKIITLSGAGISTCAGIPDFRSPETGLYHNLQKYELPQPQAIF 462
+ K ++ L GAGIST GI DFRS + G Y L ++ L +P +F
Sbjct: 155 KAKNVVVLVGAGISTSLGILDFRS-DNGFYARLARHGLSEPSEMF 198
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 41.5 bits (93), Expect = 6e-05
Identities = 21/39 (53%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +1
Query: 328 RCKKIITLSGAGISTCAGIPDFRSPETGLYHNLQ-KYEL 441
+ K+I+ ++GAGIS AGIPDFRS E GL+ +L+ +Y+L
Sbjct: 56 KAKRIVVVTGAGISCDAGIPDFRSSE-GLFSSLRAEYKL 93
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 32.3 bits (70), Expect = 0.037
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 26 NIGQRFRDAILYFYVKCRQIRLPEKV--AVMKPWMSHRRMSRQQLRW 160
+IG+ F D + Y+KC+ RLPE+ + WM + +S+ W
Sbjct: 87 SIGKVFGDFYVLEYIKCKYPRLPEEAVHGMQNGWMGSKALSQLATIW 133
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.26
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 79 ANSPPGKSGGHETVDESPQNVPPTTSM 159
A +PPG G + T + S N PP SM
Sbjct: 554 ATAPPGAPGSYNTSESSNLNAPPGVSM 580
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 106 GHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRM 210
G DE P ++PP + N +RD + RM
Sbjct: 18 GRRRFDEKPDSLPPLPDANGMSNGYRDSYKSNSRM 52
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 29.5 bits (63), Expect = 0.26
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 103 HFFREANLPTFYVKIQNCVSKPLSNIDSLSLVP 5
+ +++ NLP Y +C++K +SNIDSL P
Sbjct: 672 NIYKDLNLPRSY--FADCITKSVSNIDSLLNTP 702
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.9 bits (59), Expect = 0.81
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 229 GLLSPQDLEPAEPPEKVLDEVTLDGIGRWIKSDRCKKIITLSGAGISTCAGIP 387
GL D +P P + E D + WI+ + I +G+ CAG P
Sbjct: 157 GLTEALD-DPNTPVVTIYSEKYADAVYPWIEKTKSGNAIFTQPSGVLKCAGAP 208
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 1.9
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +1
Query: 13 GSNCQYWTKVSRRNFVFLRKMSANSPPGKSGGHETVDESPQNVPPTTSMESLRNMFRDLD 192
G + Q++ + S + + L K+ G+ E ++S + + +R + R L
Sbjct: 72 GKDTQFYEEPSSKQDIELHKLHEKLRNGQITTKEYSEKSKELGGDLNTTHLVRGLDRKL- 130
Query: 193 VDDVRMY-LALKLGLLSPQDLEPAEPPEKVLDEV 291
++ VR LAL LLS + E E +K+L++V
Sbjct: 131 LEKVRSNELALDDSLLSSSEKEVDEEADKLLEKV 164
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 118 VDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLLSPQD--LEPAEPPEKVLDEV 291
+DE QN+ T SL+++ D +D + L + G D EP+ P E+ +EV
Sbjct: 1189 IDEKEQNLEGTELDPSLQSLDTDYPIDTNALSLDHEQGFSDDSDSVYEPSSPIEEGDEEV 1248
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 127 SPQNVPPTTSMESLRNMFRDLDVDDVRMYLAL 222
S N PT + N+F DL V+++ +Y AL
Sbjct: 646 SSSNKRPTAAQLLTSNLFHDLVVNELHVYQAL 677
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 382 IPDFRSPETGLYHNLQKYELPQP-QAIF 462
+PDFR + GL H Q LP+ AIF
Sbjct: 809 MPDFRGGDRGLSHKHQNIPLPKTCAAIF 836
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 5.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 265 VLPVQDPEGSRVRVLRPSTFERHPRRDRETY 173
+LP+ P+ R+ VL+ + + PRR +Y
Sbjct: 126 LLPIYSPQIKRIVVLKENGLSKRPRRAYLSY 156
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 24.6 bits (51), Expect = 7.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 67 RKMSANSPPGKSGGHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKL 228
+K S ++ G + S Q P SME+ N ++LD + LAL L
Sbjct: 290 KKQKRKSNKAETEGTNEPETSVQIDPLNVSMENWENEMKNLDCETQVRQLALYL 343
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 24.6 bits (51), Expect = 7.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 163 SLRNMFRDLDVDDVRMYLALKLGLLSPQDLEPAEPPEKVLDEVTLDG 303
SL ++RDLD DDV+ L +G ++ Q L+ + EK+ + T G
Sbjct: 690 SLLEIYRDLDEDDVQ----LSIGHIAQQMLDWTD-NEKLYERKTQTG 731
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 7.5
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 112 ETVDE--SPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLL--SPQDLEPAEPPEKV 279
ET+D S N+P + +LR M ++L+ +L + + L SP +L+P EP ++
Sbjct: 370 ETLDSKFSNWNLPHRLVLWTLRCM-KNLNNITATSFLLMHVSLFLGSPMNLQPVEPTQED 428
Query: 280 LDEVT 294
+ V+
Sbjct: 429 IASVS 433
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 334 KKIITLSGAGISTCAGIPDFRSPETGLYHNLQKYEL 441
+K IT A + +P+F +P +Y + YEL
Sbjct: 134 EKNITFLDAATNVVHELPEFHNPNHNVYKSQAYYEL 169
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 71 KCRQIRLPEKVAVMKPWMSHRRMSRQQLRWKASEI 175
+CR++R+P + ++ + + + + R WK + I
Sbjct: 618 QCRRLRMPTPILTVEEFNALKNVDRIYPDWKVASI 652
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 97 FREANLPTFYVKIQNCVS 44
+ E +P Y+K+Q CVS
Sbjct: 59 YSEYTIPKLYIKLQYCVS 76
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 284 MKSPLMVLAGGSRAIGARRS*HFQELVFLPVLEFQTSVV 400
M PL+ ++G +A R F + ++LP++ F +V+
Sbjct: 337 MVYPLLYISGSDKACVLRMVWVFNKFLYLPLITFLGAVL 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,100
Number of Sequences: 5004
Number of extensions: 42047
Number of successful extensions: 123
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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