Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5166
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.6  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 265 PPEKVLDEVTLDGIGRWIKSDRCKKIITLSGAGISTCAGIPDFR 396
           P ++ L  + ++  G  ++  R K    L   GIS    +P FR
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFR 189


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 128 DSSTVS*PPLFPGGEFADILRKNTKL 51
           D+  ++   +  GGEF D+ R   KL
Sbjct: 629 DAGYITIEAIIGGGEFGDVCRGKLKL 654


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 173 ICFAISTWMTFECT 214
           +C AIS+ M +EC+
Sbjct: 106 VCVAISSRMEYECS 119


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 109 HETVDESPQNVPPTTSMESLR 171
           ++T   S +N   TTSMES +
Sbjct: 615 NQTSSASRENTSNTTSMESFK 635


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 399 TTEVWNSSTGRNTSS*KCYDLLAPIALDPPA 307
           TT    S T    SS    DLL  +A+ PPA
Sbjct: 64  TTRRLRSVTNCFVSSLAAADLLVGLAVMPPA 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,120
Number of Sequences: 438
Number of extensions: 2785
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)