Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5164
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    27   5.6  
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055...    27   9.7  
02_05_0223 - 26943210-26944623,26944741-26945666                       27   9.7  

>06_03_0478 -
           21259376-21259465,21259862-21259924,21260025-21260066,
           21260180-21260461,21261084-21261587,21261973-21261981,
           21262122-21262196,21262375-21262449,21262557-21263494,
           21263577-21263607,21263694-21263979,21264691-21264905,
           21265329-21265437,21265556-21265611,21265730-21265822,
           21266348-21266393,21266496-21267221,21267489-21267550,
           21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 27  VCITNKNLTLRYVFSRLGYPSASSHKEL 110
           V +TN N+ L+  ++R+G     SHKE+
Sbjct: 624 VTVTNANILLQIHYNRVGKDGLFSHKEI 651


>09_04_0275 +
           16302086-16303721,16304182-16304734,16305491-16305519,
           16305639-16305897,16305969-16306110
          Length = 872

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 234 CMSKFSS*SDVFFPSYSLVARGYSSERGTISATHRR 341
           C  K SS  D+ +PS+S+V    SS   + +  +RR
Sbjct: 654 CQRKLSSPGDLNYPSFSVVFGRRSSSSRSTTVKYRR 689


>02_05_0223 - 26943210-26944623,26944741-26945666
          Length = 779

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 461 SRWIFSVCRDSDPVVDLAKHYSF 393
           S W + VCR ++PV  +A H  F
Sbjct: 591 SAWFYHVCRWTNPVTTVAVHVIF 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,058
Number of Sequences: 37544
Number of extensions: 187477
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)