Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5162
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    28   0.61 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   1.1  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    26   2.5  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   4.3  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   5.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   10.0 

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 13  NLVEHIFVSRVASVKNKLSLVMLI----CHCFRSHIISVSHNRLCDYRKLWHFKIANVHH 180
           N V+ +F+S    ++  L   M++    C  F + +      ++CD  + W F+    +H
Sbjct: 95  NTVKMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKEFQICDSSQEWFFQFQLGYH 154


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 207 HSNFLLISLVMHIGDFEV 154
           HS FL+I+ ++HIG+ EV
Sbjct: 344 HSLFLIIASILHIGNIEV 361


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = -3

Query: 289 YNLKKSLAKSKYFIPSLAFLCVAYCNLPLKLFTNIISDAHWRF*SAIVFCNHIGD--YAI 116
           YN    L K     P   F+C AY  + ++   N ++       S IVFCN   D    +
Sbjct: 37  YNKHVQLLKEAQSKPD--FMCNAYMPMYMEATRNEVAKLIGADSSNIVFCNSATDGISTV 94

Query: 115 PK*YAIENSDKLTSLNSTY 59
              +  E +D++  LN  Y
Sbjct: 95  LLTFPWEQNDEILMLNVAY 113


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 398 ICRNVLNHNSFYLFQEEAS 342
           +CRNV   +SFY+ Q+ A+
Sbjct: 467 LCRNVFGRSSFYVQQKTAA 485


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 10  YNLVEHIFVSRVASVKNKLSLVMLICHCFRSHIISVSHNRLCDYRKLW 153
           Y LVE    +R  S+ NKL      C      ++  S     D RKLW
Sbjct: 339 YTLVEQEG-TRWNSIANKLGTSPAACMSQWRFVVGTSTQETIDRRKLW 385


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 98  DRILFRYRIIAYVITENYGTSKSPMCI 178
           DRI   Y   A +IT  Y T  +P+CI
Sbjct: 790 DRITGAYDTCAKLITGCYQTGFTPVCI 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,949
Number of Sequences: 5004
Number of extensions: 24716
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)