Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5162
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0546 - 20289272-20289470,20290054-20290223                       27   5.5  
10_08_0910 - 21495633-21495923,21496155-21496430,21496754-214969...    27   5.5  
01_03_0281 - 14570635-14574633                                         27   7.2  

>12_02_0546 - 20289272-20289470,20290054-20290223
          Length = 122

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  CFRSHIISVSHNRLCDYRKLWHFKIANV 174
           CF   +I + H  +  Y KL H+KIA++
Sbjct: 58  CFLYFMIKIIHPHMHTYAKLLHWKIASM 85


>10_08_0910 -
           21495633-21495923,21496155-21496430,21496754-21496999,
           21497187-21497296,21498228-21498387
          Length = 360

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 1   DGNYNLVEHIFVSRVASVKNKLSLVMLICHCFRSHII 111
           +G +  V+++  + V +V + L L++ I  CFRSH I
Sbjct: 242 NGRWFAVKNLPGALVVNVGDILELILYILSCFRSHQI 278


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 265  KSKYFIPSLAFLCVAYC 215
            +SKY +P L +L +AYC
Sbjct: 1230 RSKYLLPCLEYLRIAYC 1246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,144
Number of Sequences: 37544
Number of extensions: 129097
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)