Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5155
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81112-4|CAB03275.1|  317|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    28   5.8  

>Z81112-4|CAB03275.1|  317|Caenorhabditis elegans Hypothetical
           protein T02B5.4 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 442 LITLICVQFHLNTY*SCSFFIYTAMCTCYVELYILQYFIVV 320
           L+ +I  Q  L T+    FFI+ AM   Y+ + I QY + +
Sbjct: 221 LVKVINFQVFLPTFIFLGFFIFAAMFGRYITVNIAQYLVSI 261


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 YHNKILQNI*FNITSTHCSVYK 385
           YHN  LQNI     +T+C VYK
Sbjct: 106 YHNSWLQNITSETRATNCKVYK 127


>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  VVELILMRTAVFIFSDISTMCKLRSTRHFN 140
           VV+LI +   + +F  IST  KLR+ RH++
Sbjct: 205 VVKLISICMIIVLFCGISTFRKLRTLRHYS 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,395
Number of Sequences: 27780
Number of extensions: 267503
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)