Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5155
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   1.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.8  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 460 YILLFPLITLICV 422
           YILLF L+T+ CV
Sbjct: 4   YILLFVLVTITCV 16


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 460 YILLFPLITLICV 422
           YILLF L+T+ CV
Sbjct: 4   YILLFVLVTITCV 16


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 483 YFLNILYITYFYSRLL 436
           Y + +++I  FYSRLL
Sbjct: 229 YVIPLIFIILFYSRLL 244


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 555 YKYMIDSNYDIFLHNNIS*LYSAVYFLNIL 466
           YKY   +NY+ + +NN +     +Y+ N +
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 483 YFLNILYITYFYSRLL 436
           Y + +++I  FYSRLL
Sbjct: 229 YVIPLIFIILFYSRLL 244


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 617 LIRDHSSMKSESLTIDNYHDITTPII*LFWFI 712
           +IR H   K++S TID Y  I  PI+ + + I
Sbjct: 351 MIRVH---KTQSQTIDIYSRIGFPILFMLFII 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,087
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)