Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5154
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   4.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   7.0  

>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 204 IKRMMFAPNIKLWLCLGCVVVSMVSPAPTEPLYLDIIDMAAISRMS 341
           +K+ +F P+IKL   L  ++  +  P P +PL   I +     R S
Sbjct: 95  LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPS 140


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 220 NIILFIVNGESHNTKTDTDTEHRARNSNLKGEVKLIIS 107
           ++++F+VN E+H T + TD    A  S  K  + +I++
Sbjct: 292 DVVVFVVNAENHFTLSATDFLRNA--STEKSHIFIIVN 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,308
Number of Sequences: 5004
Number of extensions: 48928
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)