Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5154
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    32   0.33 
01_01_1134 + 8994315-8995892                                           29   3.1  
10_08_0806 + 20709599-20710597                                         28   5.4  
06_01_0042 + 410061-410544,411401-411837                               28   7.2  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   9.5  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    27   9.5  
03_05_0092 - 20714102-20717902                                         27   9.5  

>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
            8509204-8509553,8509631-8509729,8509811-8510105,
            8510200-8510405,8510498-8510689,8510766-8511163,
            8511258-8511444,8511473-8511528,8511800-8511872,
            8512012-8512872,8514353-8514778
          Length = 1134

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 460  VKLACWAKPRPSYPSASSKTGG 525
            ++ ACWA PRP  PS +S  GG
Sbjct: 1054 IQKACWAGPRPKRPSPTSAPGG 1075


>01_01_1134 + 8994315-8995892
          Length = 525

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 484 PRPSYPSASSKTGGDHG 534
           PRP Y SA++  GGDHG
Sbjct: 8   PRPVYLSAAAAAGGDHG 24


>10_08_0806 + 20709599-20710597
          Length = 332

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 467 WLAGPSLGLHIP-PLRVRPEVTTGGYSYEPPPP 562
           WL   S+ + IP P RV       G+  +PPPP
Sbjct: 37  WLDSVSISVRIPIPPRVATAAAATGFLAKPPPP 69


>06_01_0042 + 410061-410544,411401-411837
          Length = 306

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 427 QSCLRHHRVYRVKLACWAKPRPSYPSA-SSKT 519
           Q+ +RH  ++ ++L C +KPR   P A  SKT
Sbjct: 106 QALVRHRALHDLQLLCLSKPRSKLPLAFGSKT 137


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 629  RVWKKSVKEIDFFRPQEIIFFTLVGGVHKSILPWSPPV 516
            ++WK + K+ D      ++   L+G   K + PW PPV
Sbjct: 1190 KIWKSTEKQDDSI----LLTDALLGRFEKDLPPWEPPV 1223


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 260 GCVDGVTSSY--RAPLPGHHRHGR 325
           GCV G+  ++  R PL  HH H R
Sbjct: 23  GCVTGILQAFDRRYPLAAHHSHNR 46


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 466 LACWAKPRPSYPSASSKTGGDHGR 537
           L C++ PR +  S+SS + G HG+
Sbjct: 126 LLCFSPPRNAVASSSSSSSGSHGK 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,620
Number of Sequences: 37544
Number of extensions: 389194
Number of successful extensions: 1018
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)