Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5154
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   1.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.6  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 629 RVWKKSVKEIDFFRPQEIIFFTLVGGVHKSILPW 528
           R+ K S  E+D+   ++I FF +  G  +  + W
Sbjct: 23  RIVKASHFELDYMLGRKITFFCMATGFPRPEITW 56


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 4   RRAHVPFSHARKFRSSFGGYFKNEIEQRKYR 96
           R +H  +S +R+        +KNE E RKYR
Sbjct: 266 RTSHKRYSRSREREQKS---YKNEREYRKYR 293


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 445 HRVYRVKLACWAKPRPSYPSASS 513
           +R+Y   L   ++P P YPS SS
Sbjct: 426 YRLYNPALI-QSQPSPQYPSTSS 447


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 502 SASSKTGGDHGRILL*TPPTKVKNMISWG-LKKSISFTLFFQTRQR 636
           S +S   GD   ++    P K      W  L+  + +T FFQT ++
Sbjct: 427 STTSSLSGDESDVVE-LQPVKSSKSSGWRKLRNIVHWTPFFQTYKK 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,482
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)