Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5153
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    28   1.2  
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   6.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   6.4  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   6.4  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 700  GCQRPWVRPVSCLG 659
            GC RPWV  ++C+G
Sbjct: 1376 GCSRPWVAEIACVG 1389


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 698 VSKTLGTSSKLSWLVAAWQGRGARKM*LYRLCVARKAVTVQLYRAL 561
           +  T+G  +K   L   +Q    R   +Y L   R+A++ +LY  L
Sbjct: 33  IENTMGKGTKTEMLAPIFQLHHQRSRYIYDLYYKREAISTELYNWL 78


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 603  CCTKGSNCTTLSSSRCFEPTINRTPKTASPSG 508
            CCT+GS    L +S+C    I+   +  +P+G
Sbjct: 1238 CCTEGS-INALLNSKCLPEFIDAADENTTPTG 1268


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 319 IAVFVDTPTVARIDDGTRMIDRVPPFQW 236
           I+V+ +TP++A +D  T  ID V  F+W
Sbjct: 331 ISVY-ETPSLALVDKKTIKIDGVQNFEW 357


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 303 STKTAMIQN*KVDLSTMMFTNYNNGIATGERSMG-RAQNIQWTVARSPENSTWFTGTQAS 479
           S   +M  +   DL T    + N      E S   +  N+      SPE+++W  G+Q +
Sbjct: 321 SNSGSMTNSTSTDLPTSNLPSQNAPARPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTN 380

Query: 480 TTASGRRQE 506
             A+  R E
Sbjct: 381 IPANTNRSE 389


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 579 YSYCLSCNTKAIKLHFASPSTLPSC 653
           Y YCL C  K++   F+  S    C
Sbjct: 548 YYYCLQCECKSLHWRFSDRSNCDEC 572


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 358 LQITTMALPLGSAQWGGLRTYSGRSLVLRR 447
           LQ   M LP G+ ++GGL  +   SL + +
Sbjct: 326 LQTLLMGLPAGACEFGGLIAFGFLSLFIHK 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,312
Number of Sequences: 5004
Number of extensions: 76621
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)