Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5152
         (689 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094946-1|AAM11299.1|  236|Drosophila melanogaster RH63365p pro...    29   7.9  
AE014297-551|AAF54069.1|  236|Drosophila melanogaster CG1939-PA ...    29   7.9  

>AY094946-1|AAM11299.1|  236|Drosophila melanogaster RH63365p
           protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 482 LQIKCTKIYHYFKTNSEVNYCKIK-MSLNNLISLNCSFIVNNISFVYDSKLVGFEIYI 312
           L  KC K +     N  V   +   MS+ NL+  +    +N ISF+    +VGF IY+
Sbjct: 165 LDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSKQHWLNRISFLGLFLIVGFTIYM 222


>AE014297-551|AAF54069.1|  236|Drosophila melanogaster CG1939-PA
           protein.
          Length = 236

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 482 LQIKCTKIYHYFKTNSEVNYCKIK-MSLNNLISLNCSFIVNNISFVYDSKLVGFEIYI 312
           L  KC K +     N  V   +   MS+ NL+  +    +N ISF+    +VGF IY+
Sbjct: 165 LDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSKQHWLNRISFLGLFLIVGFTIYM 222


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,180,185
Number of Sequences: 53049
Number of extensions: 470604
Number of successful extensions: 781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)