Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5152
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b prote...    28   5.5  
U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related ...    27   9.6  

>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -2

Query: 316 ISVVSDCVHNIKISVYIHRCTHCDLKSM*IIWFNK*ME*NYEIRKFDESNYLFLDIRYLY 137
           +    +  HN+ +  Y HR    DLK   +  F      NYE+ K    +  F DI+ + 
Sbjct: 612 VECCDEACHNL-VEHYGHRILLVDLKDFQLTRFQ-----NYEMLKIFHDDLFFSDIKKMP 665

Query: 136 FRNNRNKLNIAFSFV 92
            R   N+   AFSF+
Sbjct: 666 NRWEDNRAYQAFSFL 680


>AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b protein
           protein 54 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 461 IYHYFKTNSEVNYCKIKMSLNNLISLNCSFI 369
           +YH    N       + +SLN+L+  NCSFI
Sbjct: 193 LYHVLPQNFRELTLAVNVSLNDLLLTNCSFI 223


>U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related
           protein 2 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 265 HRCTHCDLKSM*IIWFNK*ME*NYEIRKFDESNYLF 158
           H  T+C +K    ++FN+    ++E R+F  S Y F
Sbjct: 206 HTETYCPMKPSSQLFFNEDFSRDFENRRFQRSRYQF 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,255,539
Number of Sequences: 27780
Number of extensions: 273744
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)