Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5151
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.1  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 392 LQPGDTGRPGWLAGDA 345
           +Q G+T R  W+AG+A
Sbjct: 223 IQQGNTFRYQWIAGNA 238


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 392 LQPGDTGRPGWLAGDA 345
           +Q G+T R  W+AG+A
Sbjct: 223 IQQGNTFRYQWIAGNA 238


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 217 DSEPGLPIRLFFPWSRT 267
           DSEPG+P++     SRT
Sbjct: 209 DSEPGIPLKRKQRRSRT 225


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 10  RPRFDRLRGRRASGRVQLLRSFVHRH-RRTLFPQQRGTLHPGACRT 144
           R +F+R RGR+   R Q L      H  R L  ++R  +    C T
Sbjct: 237 RSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 282


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 164 CSPRFPGVRQAPGCS 120
           C+PR PGV     CS
Sbjct: 101 CTPREPGVAGGDVCS 115


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 10  RPRFDRLRGRRASGRVQLLRSFVHRH-RRTLFPQQRGTLHPGACRT 144
           R +F+R RGR+   R Q L      H  R L  ++R  +    C T
Sbjct: 239 RSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,828
Number of Sequences: 336
Number of extensions: 2107
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)