Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5151
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    29   3.9  
Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protei...    28   6.9  
U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protei...    28   6.9  
U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D1.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPG 231
           QRG   PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 227 QRGAGTPGAPGAPGNAG-----PAGPSGQDGFP-GQDGAPG 261


>Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical
           protein F54D1.2 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPG 231
           QRG   PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 211 QRGAGTPGAPGAPGNAG-----PAGPSGQDGFP-GQDGAPG 245


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPG 231
           QRG+  PGA   PGN G     P+    QD  P G+D  PG
Sbjct: 211 QRGSGAPGAPGAPGNAG-----PAGPAGQDGFP-GQDGAPG 245


>Z70271-3|CAA94234.1|  358|Caenorhabditis elegans Hypothetical
           protein W08D2.6 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 QRG-TLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPGLP 237
           Q+G T HPGA  TPG+ G    P  A  D    P G     G P
Sbjct: 264 QKGETGHPGAQGTPGHNGPTGPPGDAGPDGGPGPQGEQGADGGP 307


>U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protein
           10 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPG 231
           QRG+  PG    PGN G     P+    QD  P G+D +PG
Sbjct: 211 QRGSGAPGGPGAPGNAG-----PAGPAGQDGAP-GQDGQPG 245


>U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protein
           144 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 109 QRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP*GRDSEPG 231
           QRG+  PG    PGN G     P+    QD  P G+D +PG
Sbjct: 223 QRGSGAPGGPGAPGNAG-----PAGPAGQDGAP-GQDGQPG 257


>U12964-1|AAL02497.1|  465|Caenorhabditis elegans Hypothetical
           protein F26F4.5 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 43  ASGRVQLLRSFVHRHRRTLFPQQRGTLHPGACRTP-GNRGLQCRPPSAREDQDHHP*GRD 219
           AS R    R+ V  HRR +F +  G       RTP   R  + R  +++ + + H     
Sbjct: 48  ASPRNCYARNNVISHRRRVFDEPDGATMSSPARTPVEQRAAEIRRMNSQTEANLHKERNH 107

Query: 220 SEPGLPI 240
           + P +PI
Sbjct: 108 APPPMPI 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,927
Number of Sequences: 27780
Number of extensions: 212366
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)