Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5150
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    31   0.085
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.4  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   5.6  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   7.3  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     25   7.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.7  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   9.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.7  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 CRSRST*RCPYLNPTR-STSQWSNLSMYLFIRLSTKLLKN 308
           C   ST  CPYL PT        NL ++L++RLS   + N
Sbjct: 404 CNPASTILCPYLFPTNVRMESLINLELFLYLRLSQNDIDN 443


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 PHPVAVSVPQYVKVPIPQPYPVHVTVEQP 262
           P PVAV   Q  +  I Q  P+HV+  +P
Sbjct: 278 PQPVAVEAIQQSRAVISQQLPLHVSPRKP 306


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 143 VTVVKKIGVPIPHPVAVSVPQYVKVPIPQPYP 238
           V +++ +G P  H ++V  P YV   +P   P
Sbjct: 236 VEIIRVLGTPSYHEISVMNPNYVNHSLPNVRP 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 170 PIPHPVAVSVPQYVKVPIPQPYPVHV 247
           P P P AV VP     PIP P P  +
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI 757


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 325 DRVRYWFFNNLVDNLINRYMDRLLHCDVDRVGLRY 221
           D+V YW   + V  L++R ++R+  C +  +  +Y
Sbjct: 24  DKVFYWSQIHKVRKLVDRSIERMESCSIINIITKY 58


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 277 NRYMDRLLHCDVDRVGLRYGHLHVLRDRHSHRMGNRNSDLLH 152
           N+Y  ++L   +    LR G +H L   H  ++      L+H
Sbjct: 201 NKYDTKVLRKAILEKSLRMGGIHDLEQSHEMQLAKNGRTLVH 242


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 245 RGPGRVEVWAPSRTAG 198
           +G GRVE+W  +RT G
Sbjct: 191 KGNGRVEIWFGARTPG 206


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 113 THTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVP 220
           + T+H +P + T  ++       P AV+ PQ V+ P
Sbjct: 315 SETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 8   EPQ*GNMIAFKTTXXXXXXXXXXXRPSEEWEPEGHTHTEHTKPYHVT 148
           E Q G  +AF +T           R  EEW PE     E +  YH T
Sbjct: 282 EGQMGKALAFASTHPSSKKRI---RKIEEWLPEAQVKRETSDCYHET 325


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 219 PYLNPTRSTSQWSNLS 266
           P+LN   S S+WSN+S
Sbjct: 352 PHLNDESSRSRWSNIS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,440
Number of Sequences: 5004
Number of extensions: 45909
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)