Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5149
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 72 6e-14
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 62 9e-11
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 62 9e-11
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 60 2e-10
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 60 3e-10
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 60 3e-10
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 55 1e-08
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 54 2e-08
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 53 3e-08
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 53 3e-08
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 53 4e-08
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 52 5e-08
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 52 9e-08
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 51 1e-07
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 50 2e-07
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 49 7e-07
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 41 1e-04
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 37 0.003
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 36 0.007
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 31 0.19
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 29 0.43
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 29 0.57
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 3.0
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 27 3.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 25 7.0
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 9.2
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.2
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 72.1 bits (169), Expect = 6e-14
Identities = 32/65 (49%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMK-FQKLKEAKEILCDPSKR 249
DYYA+L +N+T +QI +Y LALQ+HPD+N G++E +K FQ+L+ A E+L D +KR
Sbjct: 12 DYYAILKLQKNATFQQIRKQYLFLALQYHPDRNPGDEERAVKRFQRLQLAHEVLSDATKR 71
Query: 250 ALYDK 264
+YD+
Sbjct: 72 LIYDQ 76
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 61.7 bits (143), Expect = 9e-11
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 46 LNYQRNPDDDYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKE 225
L +++ D+Y +LG + +T +I Y+ LAL +HPDKN G EAE +F+++ EA
Sbjct: 340 LELKKSKRKDHYKILGVSKEATDIEIKKAYRKLALVYHPDKNAGNLEAEARFKEVGEAYT 399
Query: 226 ILCDPSKRALYD 261
IL DP R +D
Sbjct: 400 ILSDPESRRRFD 411
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 61.7 bits (143), Expect = 9e-11
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 55 QRNPDDDYYALLGCDENSTVEQITAEYKILALQHHPDKN-DGEKEAEMKFQKLKEAKEIL 231
QR D DYY +L ++ + I Y+ LA+ +HPDKN + + A KFQKL EA ++L
Sbjct: 3 QRVVDRDYYDILNISVDADGDTIKKSYRRLAILYHPDKNRENPEAAREKFQKLAEAYQVL 62
Query: 232 CDPSKRALYDKWRRSG 279
DP R YDK + G
Sbjct: 63 SDPKLREKYDKLGKVG 78
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +1
Query: 85 LLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSKRALYDK 264
+LG ++++ +I Y+ L Q HPDKN G +EA+ KF ++ +A E+L DP +R +YD
Sbjct: 11 ILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDA 70
Query: 265 WRRSGI 282
+ G+
Sbjct: 71 YGEEGL 76
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = +1
Query: 67 DDDYYALLGCDENSTVEQITAEYKILALQHHPDKN-DGEKEAEMKFQKLKEAKEILCDPS 243
D +YY LLG ++T I Y+ LA+++HPDKN D + A KFQK+ EA ++L D
Sbjct: 6 DTEYYDLLGISTDATAVDIKKAYRKLAVKYHPDKNPDDPQGASEKFQKISEAYQVLGDEK 65
Query: 244 KRALYDKW 267
R+ YD++
Sbjct: 66 LRSQYDQF 73
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDKNDG-EKEAEMKFQKLKEAKEILCDPSKR 249
DYY +LG + S+ +I +Y L L++HPD+N G E E +FQ +++A E+L DP R
Sbjct: 12 DYYTILGAESTSSYVEIRQQYLKLVLRYHPDRNPGREAEVLPQFQLIQKAHEVLKDPKLR 71
Query: 250 ALYDKWR 270
L+D+ R
Sbjct: 72 ELFDQRR 78
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEA--EMKFQKLKEAKEILCDPSK 246
+ Y LG +++T +QI Y L+ HPD++ +++A E KFQ ++ A E+L DPSK
Sbjct: 8 ELYLALGLPKDATSDQIKESYYRLSRLFHPDRHTADQKAAAEEKFQIIQHAYEVLSDPSK 67
Query: 247 RALYDKWRRSGI 282
+ +YD + G+
Sbjct: 68 KEIYDNFGEQGL 79
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 53.6 bits (123), Expect = 2e-08
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 8/88 (9%)
Frame = +1
Query: 67 DDDYYALLGCDENSTVEQITAEYKILALQHHPDK-NDGEK--EAEMKFQKLKEAKEILCD 237
D D Y++LG +++++ E I Y+ ALQHHPD+ +D EK EA ++F K+ A +L D
Sbjct: 29 DIDPYSVLGVEKDASDELIRRAYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSD 88
Query: 238 PSKRALYDKWRR-----SGIAMGFKQWL 306
+R YDK + + I +K+WL
Sbjct: 89 KKRRKHYDKTGQLRETDADIDFDWKEWL 116
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 79 YALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSKRALY 258
Y +L D ++ ++ Y+ LAL++HPDKN + KF+++ A EIL D KRA Y
Sbjct: 8 YEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGD---KFKEISRAYEILADEEKRATY 64
Query: 259 DKWRRSGIAMG 291
D++ G+ G
Sbjct: 65 DRFGEEGLQGG 75
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 53.2 bits (122), Expect = 3e-08
Identities = 25/65 (38%), Positives = 41/65 (63%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSKRA 252
D Y LG ++++ +I + Y LA Q+HPD N +K A+ KF ++K+A E+L DP K+
Sbjct: 86 DPYKTLGVSKSASASEIKSAYYKLAKQYHPDANP-DKAAQDKFVEIKQAYEVLQDPKKKK 144
Query: 253 LYDKW 267
+D +
Sbjct: 145 AFDTY 149
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 52.8 bits (121), Expect = 4e-08
Identities = 29/77 (37%), Positives = 44/77 (57%)
Frame = +1
Query: 34 VDEILNYQRNPDDDYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLK 213
V +I+ Y+ + YY +L + T +I YK LALQ HPDKN A+ F+ +
Sbjct: 103 VQKIIKYKNH---QYYEILDLKKTCTDTEIKKSYKKLALQLHPDKNHA-PSADEAFKMVS 158
Query: 214 EAKEILCDPSKRALYDK 264
+A ++L DP+ RA YD+
Sbjct: 159 KAFQVLSDPNLRAHYDR 175
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 52.4 bits (120), Expect = 5e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSKRA 252
DYY LLG +E++ ++I ++ +L++HPDKN + +A KF L+ A L D R
Sbjct: 9 DYYELLGINEDAQDQEIHRAWRKTSLKYHPDKNPNDPKAAEKFHMLQLAYNALIDVQLRK 68
Query: 253 LYDKWRRSGIA 285
YD R + +A
Sbjct: 69 AYDSERFAKLA 79
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 51.6 bits (118), Expect = 9e-08
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 67 DDDYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSK 246
D D Y +L + +S +++I A Y+ LALQ+HPD+N G ++ F ++ A IL + K
Sbjct: 7 DMDCYEILQVNHDSDLQEIKANYRKLALQYHPDRNPGIEDYNEIFSQINAAYNILSNDDK 66
Query: 247 RALYDK 264
R ++K
Sbjct: 67 RKWHEK 72
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +1
Query: 67 DDDYYALLGCDENSTVEQITAEYKILALQHHPDKN--DGEKEAEMKFQKLKEAKEILCDP 240
D Y +L ++ E+I YK LAL HHPDK ++EA +F+ ++EA +IL DP
Sbjct: 4 DTKLYDILEVHFEASAEEIKKSYKRLALLHHPDKAPIHEKEEAAERFRGVQEAYDILKDP 63
Query: 241 SKRALYDKW 267
R +YD +
Sbjct: 64 ESREMYDMY 72
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDK--NDGEKEAEMKFQKLKEAKEILCDPSK 246
DYYA+L ++ E+I YK AL+ HPD+ A +FQ + EA +L D S+
Sbjct: 4 DYYAILNITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAYYVLSDNSR 63
Query: 247 RALYDKWRRSGIA 285
RA YD+ S A
Sbjct: 64 RAQYDRESASSSA 76
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 48.8 bits (111), Expect = 7e-07
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 67 DDDYYALLGCDENSTVEQITAEYKILALQHHPDKN-DGEKEAEMKFQKLKEAKEILCDPS 243
D Y L ++ ++ Y+ LAL++HPDKN +GEK KF+++ A E+L DP
Sbjct: 4 DTKLYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEK----KFKEISLAYEVLSDPQ 59
Query: 244 KRALYDKW 267
+R LYD++
Sbjct: 60 RRKLYDQY 67
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 73 DYYALLGCDE---NSTVEQITAEYKILALQHHPDKN--DGEKEAEMKFQKLKEAKEILCD 237
D+YA+LG + + EQI + L+HHPDK G + F+ +++A EIL D
Sbjct: 97 DHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYEILSD 156
Query: 238 PSKRALYD 261
P +R +D
Sbjct: 157 PVRRRQFD 164
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 73 DYYALLGCDENSTVEQITAEYKILALQHHPDK-----NDGEKEAEMKFQKLKEAKEILCD 237
D Y +LG + ++V+ + YK L+++ HPDK N +E E + ++ A L D
Sbjct: 98 DPYEILGIAKGTSVDDVRRHYKRLSIKFHPDKVRNMVNTTREEVEKHYIEITNAYRALTD 157
Query: 238 PSKRALY 258
R Y
Sbjct: 158 DKTRENY 164
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/92 (27%), Positives = 44/92 (47%)
Frame = +1
Query: 34 VDEILNYQRNPDDDYYALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLK 213
VD + + +N +Y LL +++++I Y+ ++ +HPDKN KE + L
Sbjct: 28 VDSLKSILKNKAT-FYELLEVPTKASIKEINRAYRKKSILYHPDKNPKSKEL---YTLLG 83
Query: 214 EAKEILCDPSKRALYDKWRRSGIAMGFKQWLG 309
IL + R YD + ++ GF +W G
Sbjct: 84 LIVNILRNTETRKRYDYFLKN----GFPRWKG 111
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 229 LCDPSKRALYDKWRRSGIAMGFKQW--LGMKDHVQQSMHWSKPNTKDR 366
LC + + +KWR+ G +G +W G +++V+ + +P+ +R
Sbjct: 840 LCKSRRLGILEKWRKMGSKIGTSEWDLKGGEEYVELMQQYVRPSLTNR 887
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 29.5 bits (63), Expect = 0.43
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 79 YALLGCDENSTVEQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSKRALY 258
Y +L +V+ I Y+ +L HPDKN +A F LK+A+ L + R
Sbjct: 33 YDVLDILPGMSVDDIRNLYRKKSLMIHPDKNRDNPKAADAFDILKKAESDLVNDKIRESL 92
Query: 259 D 261
D
Sbjct: 93 D 93
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 73 DYYALLGCDENSTV--EQITAEYKILALQHHPDKNDGEKEAEMKFQKLKEAKEILCDPSK 246
++Y++L + T ++I Y+ L HPDK + ++KEA ++L
Sbjct: 2 NHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEKD 61
Query: 247 RALY 258
R Y
Sbjct: 62 RQQY 65
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 354 IRLGPVHGLLHMIFHTQPLLEAHSYTTTTPL 262
I L P H L+++ + P L SYT T L
Sbjct: 427 ITLAPQHSFLNIVINLNPALALKSYTIITLL 457
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Frame = +1
Query: 79 YALLGCDENSTVEQITAEYKILALQHHPDKNDG-------------EKEAEMKFQKLKEA 219
Y +L T I +Y L +HHPDK K E F+ L A
Sbjct: 34 YEILELPRTCTANDIKRKYIELVKKHHPDKMKNASQLAPTESPPEINKHNEEYFRLLLAA 93
Query: 220 KEILCDPSKRALYDKW 267
+L D +R YD++
Sbjct: 94 NALLSDKRRREEYDRF 109
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 326 SSPCTGPSLILRIACWKEMEASRQVHLALAPV 421
SS C+ L I+C + +E ++HL + PV
Sbjct: 379 SSTCSRNRLCYSISCPRRLEQQARLHLKVQPV 410
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 317 IMCSSPCTGPSLILRIACWKEMEAS 391
I C SPC+G +LIL + +++ S
Sbjct: 334 ITCGSPCSGEALILGLNVLSKVDLS 358
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 160 PDKNDGEKEAEMKFQKLKEAKEILCDPSKRALYDKWRRSGIAM 288
P K +GE+E+ KLK+ ++L SK+ K+ S I +
Sbjct: 268 PGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTKFEESDICI 310
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 109 TVEQITAEYKILALQHHPDKNDGEKEAEMKF 201
T+E + A Y I L HHPD + E E + F
Sbjct: 972 TMEYV-ATYLIHLLSHHPDISSIESENSLDF 1001
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,898
Number of Sequences: 5004
Number of extensions: 47450
Number of successful extensions: 145
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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