Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5148
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 170 1e-43
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 33 0.032
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 31 0.17
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 30 0.22
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 30 0.30
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 29 0.39
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.69
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 1.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 27 1.6
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.6
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 27 2.1
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.1
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 2.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.1
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.8
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 4.8
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 4.8
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 25 6.4
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 25 6.4
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 25 6.4
SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit S2... 25 6.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 6.4
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 8.5
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 25 8.5
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 25 8.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.5
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 170 bits (414), Expect = 1e-43
Identities = 82/144 (56%), Positives = 109/144 (75%), Gaps = 1/144 (0%)
Frame = +2
Query: 107 DGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVN 286
+G + + +E+L DE+ SRTRLL+N+IK+MKSE R++HE +KIKEN EKI N
Sbjct: 22 EGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNN 81
Query: 287 KTLPYLVSNVIELLDVDPQE-EEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDA 463
K LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+IGLV+
Sbjct: 82 KMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEP 141
Query: 464 EKLKPGDLVGVNKDSYLILETLPS 535
E+L PGDL+GVNKDSYLI++ LPS
Sbjct: 142 EELHPGDLIGVNKDSYLIIDKLPS 165
Score = 42.7 bits (96), Expect = 4e-05
Identities = 17/21 (80%), Positives = 21/21 (100%)
Frame = +1
Query: 538 EYDARVKAMEVDERPTDQYSD 600
EYD+RVKAMEVDE+PT++YSD
Sbjct: 166 EYDSRVKAMEVDEKPTERYSD 186
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 33.1 bits (72), Expect = 0.032
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +2
Query: 176 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 355
L N ++ ++ V + ++Q I + T+ ++ + ++ + LL + Q +E
Sbjct: 5 LKTNVLQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQE 64
Query: 356 DGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP 532
G+ V + GK V +K Y + + +D +++KP V + DSY +++ LP
Sbjct: 65 PGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILP 124
Query: 533 S 535
+
Sbjct: 125 N 125
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = +2
Query: 119 ALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLP 298
ALS+ + +PT+ +LL ++M ++ +++ D + E +K +++ LP
Sbjct: 406 ALSQIAVEIPTEVSKHHAQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
Query: 299 YLVSNVIELLD 331
L+ ++ LL+
Sbjct: 466 MLMERLVGLLE 476
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.3 bits (65), Expect = 0.22
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 182 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDG 361
DNE K MK E + + Q + ++ + ++K+K K ++ + EEEED
Sbjct: 89 DNEAKKMKREKEILRQQRQKRKSELTQLSQKVK-EKFKKMRKKPARRIVTIANDEEEEDD 147
Query: 362 AVVDLDS-QRKGKCAVIK 412
+D D+ +RK +K
Sbjct: 148 QTMDEDAFERKSMQGELK 165
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.9 bits (64), Expect = 0.30
Identities = 29/130 (22%), Positives = 53/130 (40%)
Frame = +2
Query: 80 TLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIK 259
T E E +L EEV R PTD+ + D + + K+E + I Q ++IK
Sbjct: 702 TAEKPFTTEKPLSSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ-----QTNEIK 756
Query: 260 ENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFL 439
+ LP SN E + + + ++ L+SQ + +++ +
Sbjct: 757 HVPTNTTSSVKLPQQPSNEDEKERITTADYADSTSLERLESQEPNRNELVQVGSSNAGNT 816
Query: 440 PVIGLVDAEK 469
+G+ + EK
Sbjct: 817 TSVGMNEHEK 826
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 86 EDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKEN 265
+DK+ E E +S + + E +++ + NE+K+ K + + ++ N KE+
Sbjct: 824 QDKNQIETLNERISAAADELSSMESINKNQA--NELKLAKQKCSNLQEKINFGNKLAKEH 881
Query: 266 TEKI 277
TEKI
Sbjct: 882 TEKI 885
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.7 bits (61), Expect = 0.69
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 KCVWVQELLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLL 181
KC+ +Q ++ ++Y + + DKS ++ E+ L + R+ ++ V +R+
Sbjct: 111 KCLRMQ-IVAQEEYVAPLIQKLEIIEKKLDKSFRKNMEDEL--RITRLASENNVLISRI- 166
Query: 182 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIK-VNKTL 295
+ K SE+ LQ QN+ K++ EKIK NK L
Sbjct: 167 -DRTKRHFSELFTQKQMLQLQNENFKDDYEKIKEENKRL 204
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 98 IWEDGEEALSEEVLRMPTDEIVSRTRLLDN 187
++ DGE+ L E+ ++PT+ I S T DN
Sbjct: 324 LFVDGEKGLRSELSQIPTENIDSTTDRFDN 353
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 176 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 355
L+D +IM++E R + ++ + I + + N +LP+ I+L+D + E
Sbjct: 1114 LIDGHSEIMENERRRPKYRIRLSGNPILGDGKSDNQNMSLPFYRGEYIQLIDANQDNYLE 1173
Query: 356 D 358
+
Sbjct: 1174 E 1174
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 1.6
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +2
Query: 35 KDYYEKTNHNITMATT--LEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKS 208
++ E+ H++++ +ED++I +DGE A++E+ R + S T+ ++K K+
Sbjct: 134 EEIIEQAQHDVSLRNLSGIEDENIIDDGETAINEQKKR--EANVFSDTQSAP-QLKSGKA 190
Query: 209 EVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVV 370
+ N K N + +V V++ + +D PQE+ + +V
Sbjct: 191 LPADFENPYNLSNSKPVNNNNEDRVE-----AVTSENKSIDSAPQEKNHEYEIV 239
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 499 VDSY--QVSWFEFLCIYQADDG 440
VD+Y SW+E LC Y A+DG
Sbjct: 75 VDNYILSYSWYERLCSYLAEDG 96
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.6
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = +2
Query: 17 QELLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL--LDNE 190
QELLNLK + T LE+ ++ LS +VL++ T+EI L L+ E
Sbjct: 389 QELLNLKSNNSSVDGVKTRRQLLEENAL-------LSHKVLKL-TEEIQDLETLNQLNTE 440
Query: 191 IKIMKSEVM-RISHELQAQNDKIKENTEKIKVNKTLPYLVS-NVIELLDVDPQEEEEDGA 364
I+ +SE + + E Q + + + + K L +S + ELL ++ + E+ +
Sbjct: 441 IEARQSEKLNEVQEETQRLSQLLISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIV 500
Query: 365 VVDLDSQR 388
+ +L+S +
Sbjct: 501 IDELNSAK 508
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 415 FNPANIFLARHRLGRCRETQTRRLGRSQQRLLFDLRNASQRE 540
F+ +FL R CR+ RR +++Q LL++ R+A + +
Sbjct: 298 FHKLRLFLMERRYYYCRQRSVRRKEKTRQLLLYE-RSAPKNQ 338
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 351 KKTAPLSI*THSVKGNAL*SRLQPGKHISCPSSAW 455
+K AP + TH K N+L S +P S S +W
Sbjct: 352 RKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSW 386
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 182 DNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL---DVDPQEEE 352
DN++ +++ +M + + N+K+ E + +KTL ++ S ++ L DV EE
Sbjct: 700 DNDMASLEAPMMSHNTDTDTLNNKLNEKDNVVFEDKTLQHVASEIVPNLPPADVGELNEE 759
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 194 KIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVI 319
+++ +E+ R+S L Q ++ +TEK ++N L SNV+
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVL 1168
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 508 LFDLRNASQREYDARVKAMEVDER 579
L++ R A QREYD +++A ER
Sbjct: 221 LYNQRRALQREYDTQLRAFRTYER 244
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 146 PTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIEL 325
P+ EI S+ DNE ++ + + IS+E +ND +E E N+ S+
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEE-AETSSGNEAADDEDSSSDAQ 119
Query: 326 LDVDPQEEEEDG-AVVDLDSQRK 391
V E DG + +LD +RK
Sbjct: 120 SSVPSFSEIHDGMSEEELDKERK 142
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 326 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 421
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/61 (18%), Positives = 29/61 (47%)
Frame = +2
Query: 176 LLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 355
L+D IM++ R + ++ + I + + N ++PY+ ++++D + E
Sbjct: 932 LIDGHCPIMENGKRRPKYRIRLSGNPILGDGKSDNQNMSIPYIRGEYVQMIDANQDNYLE 991
Query: 356 D 358
+
Sbjct: 992 E 992
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +2
Query: 185 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 364
N + + ++ + ++Q + I +EK++ + + S + E L+++ QEE+ +
Sbjct: 196 NGLSVKLPNILTMDEQIQRLKEAIA--SEKLQQEERSQIIKSLMEEELEINEQEEKIKHS 253
Query: 365 VVDLD 379
+DLD
Sbjct: 254 FIDLD 258
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 26 LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 178
+ LKDY + T+ L D+ I DG++ E++ + EI +T L
Sbjct: 848 ITLKDYVDSFKPTNTVIKPLGDRDIMPDGQQLF--ELMATYSVEISEKTEL 896
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +2
Query: 68 TMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMR---ISHELQ 238
T+ L+D +IW D S R+ + R + ++ +++ + I + +Q
Sbjct: 300 TVGLMLQDNAIWSDYPRVWSAFCGRLNDKSVACRIKCIEVASNALQNSLATSEIIENVVQ 359
Query: 239 AQNDKIKENTEKIKV 283
K+ + EK++V
Sbjct: 360 MLQSKLADTDEKVRV 374
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 205 LHYFDFIVQKSGSTYDFISWHAK---NFLTESFLAILPN*LV 89
L + D ++K G+T FI WH N S +I+ N ++
Sbjct: 39 LRHVDIEMKKQGNTIKFIVWHGSRKHNACIRSVYSIINNMII 80
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 107 DGEEALSEEVLRMPTDEI--VSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 280
D + L +L+ +DE+ ++ T L+DN ++ ++ +S + + I E++
Sbjct: 307 DSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEGHIVHALEEMA 366
Query: 281 VNKTLPYL 304
++ PY+
Sbjct: 367 YDEENPYV 374
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 101 WEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQN 247
W++G + +E++ D +V + + + +KSEV ++ E+ QN
Sbjct: 141 WKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQN 189
>SPBC30D10.12c |rsm27||mitochondrial ribosomal protein subunit
S27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 14 VQEL--LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEV 136
VQEL LK YY T + + T L DK+ + D +E L E+
Sbjct: 35 VQELKGAKLKSYYPATINYRQLRTLLNDKT-FPDSDEELRMEI 76
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 455 VDAEKLKPGDLVGVNKDSYLILETLPSGSMTP 550
VD+E+ PGD V D + + PS S +P
Sbjct: 8 VDSERDNPGDKVETQSDKNHLPKASPSQSQSP 39
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 41 YYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSR 169
YY K N N ++D ++W DG E + E ++R
Sbjct: 199 YYHKNNRNPIDWKLVQDCAMWPDGYPGTGRESEKGSNLEAITR 241
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 8.5
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +2
Query: 38 DYYE-KTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEV 214
DY K+ ++ AT +++ +WE ++ EE++ P E + L E K M +E
Sbjct: 40 DYQNIKSANDYDTATRWQNQFVWELARHSVGEEIVVYPKFE-----KYLGEEGKEM-AEK 93
Query: 215 MRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 355
R H+L + K + K + +P L ++E L EEE+
Sbjct: 94 DRHEHQL-VKEMLYKFQSMKANQSNFIPAL-DELMESLQKHIDEEEQ 138
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 83 LEDKSIWEDG---EEALSEEVLRMPTDEIVSRTRLLDNEIKI 199
+ DK WE+ +E + R+PTD+ +++ N +K+
Sbjct: 462 VHDKKSWEEMNAIQEYFQRPITRVPTDDYEELEKVVKNALKM 503
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/82 (19%), Positives = 32/82 (39%)
Frame = +2
Query: 47 EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRIS 226
E +H++ +DK + DG +E + S+ R++ N+ +V+
Sbjct: 68 EDISHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPV 127
Query: 227 HELQAQNDKIKENTEKIKVNKT 292
ND + K V++T
Sbjct: 128 KTENFANDLDTTSDSKPVVHQT 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,484
Number of Sequences: 5004
Number of extensions: 41276
Number of successful extensions: 178
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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