Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5144
         (591 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    33   0.57 
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    31   2.3  
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AB208996-1|BAD92233.1|  489|Homo sapiens ST8 alpha-N-acetyl-neur...    29   9.3  

>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 33.5 bits (73), Expect = 0.57
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 251 YTHYHLFNTHTHTHIYSFVYVALAKSEIIKVYSFTI 144
           YTH H+ +THT THIY+  ++       I  Y++T+
Sbjct: 38  YTHIHM-HTHTQTHIYTQAHIHSCTQINIYTYAYTL 72


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 278 YIKSTTKKHYTHYHLFNTHTHTHIYSFVYVALAKSEIIKVYSFT 147
           +I + T  H  H H+ +THTHTH Y+  +  +  +  +  Y++T
Sbjct: 288 HINTHTHAHI-HMHM-HTHTHTHTYTHAHAHIHINTYMHTYTYT 329



 Score = 29.5 bits (63), Expect = 9.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 287 PKKYIKSTTKKHYTHYHLFNTHTHTHIYSFVY 192
           P  +I + T  H +H H+ NTHTH HI+  ++
Sbjct: 273 PHTHIHTCTHMH-SHAHI-NTHTHAHIHMHMH 302


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 263 TKKH-YTHYHLFNTHTHTHIYSFVYVALAKSEIIKVY 156
           T+KH YTH H++  +T+ ++Y++ YV +     + +Y
Sbjct: 43  TRKHMYTHKHMY-VYTYIYVYTYTYVCVHIHICVHIY 78


>AB208996-1|BAD92233.1|  489|Homo sapiens ST8
           alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
           variant protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 9.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 287 PKKYIKSTTKKHYTHYHLFNTHTHTHIYS 201
           P  + ++ T  H TH H   THTHTHIY+
Sbjct: 63  PPPHARALTHTH-THTH---THTHTHIYT 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,976,257
Number of Sequences: 237096
Number of extensions: 1513235
Number of successful extensions: 2279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)