Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5144
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine rece...    31   0.61 
U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine rece...    29   1.9  
Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine rece...    29   3.3  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   7.5  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   7.5  
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    27   10.0 

>U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 30 protein.
          Length = 324

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 280 FLGII*LRNLHSAFLLYKYEQFHTFPSAQFSQICVYTTFLLHVLRYSN 423
           FLG+I   ++ ++ + Y+Y Q+       FS IC   +++L V  Y N
Sbjct: 236 FLGVITFASMFTSKISYEYAQYAISVIFMFSPICSPFSYILFVPHYRN 283


>U80023-6|AAG24045.1|  306|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 29 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 280 FLGII*LRNLHSAFLLYKYEQFHTFPSAQFSQICVYTTFLLHVLRYSNYNTRER 441
           FLG+I    + +  + Y+Y Q+       FS IC   +++L V  Y N  T ++
Sbjct: 236 FLGVIIFAAMFAKNVDYRYAQYSVTIIFMFSPICSPFSYILFVPHYRNVITGKK 289


>Z81525-3|CAB04258.1|  467|Caenorhabditis elegans Hypothetical
           protein F33A8.4 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 435 GTSHTVFWLQTRIPL*EP*TDLHSRF*RYRFKVTLEFHKDFKHTDRT 575
           G   T+F+    +P+      LH  F    ++VT E HK ++H+++T
Sbjct: 334 GKEETLFYSMIVLPIYIRKYVLHGNFWMSDYRVTYEGHKLYQHSEKT 380


>U80023-4|AAG24038.1|  318|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 25 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +1

Query: 280 FLGII*LRNLHSAFLLYKYEQFHTFPSAQFSQICVYTTFLLHVLRYSN--YNTRERV--- 444
           FLGI     + +  L Y+Y Q+       FS +C    +++ V  Y    +  +E V   
Sbjct: 236 FLGITVFVAMFTRLLDYQYGQYIVSVCFMFSPVCSPYAYIIFVPHYRKFIFGRKENVPKL 295

Query: 445 TQSSGSKPGFPYENPKLIYI 504
            Q     P  P   P L YI
Sbjct: 296 EQGQCETPESPRNTPNLPYI 315


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 256 FFVVDLMYFLGII*LRNLHSAFLLYKYEQFHTFPSAQFSQICVYTTF 396
           FF+  L++   I  L ++ + +L YK+    + PS  F ++C   TF
Sbjct: 16  FFIFALLFTFSISFLGSICNLYLFYKFVTRASKPSG-FQKLCTMKTF 61


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 406 REAKTLYIHIFAKIARTGKYETVHTYREGMQNANFLIKLCLKNTLNQQQK 257
           RE  T  + I  +++     +  H + E  QN  F ++LC KN+L +  K
Sbjct: 77  REKLTREVEIHRQLSHRNIVQ-FHHFFEDSQNVYFTLELCSKNSLMELNK 125


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 406 REAKTLYIHIFAKIARTGKYETVHTYREGMQNANFLIKLCLKNTLNQQQK 257
           RE  T  + I  +++     +  H + E  QN  F ++LC KN+L +  K
Sbjct: 77  REKLTREVEIHRQLSHRNIVQ-FHHFFEDSQNVYFTLELCSKNSLMELNK 125


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 280 FLGII*LRNLHSAFLLYKYEQFHTFPSAQFSQICVYTTFLLHVLRYSNYNTRERVTQSSG 459
           FLG+I   ++ +  + Y+Y Q+       FS I    +++L V  Y N  T +   ++  
Sbjct: 234 FLGVITFASMFTGKIGYEYAQYAISVIFMFSPIISPFSYILFVPHYKNVITGK--VKNPK 291

Query: 460 SKP 468
           SKP
Sbjct: 292 SKP 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,630,323
Number of Sequences: 27780
Number of extensions: 256785
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)