Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5143
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 72 1e-13
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 62 1e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 58 1e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 48 2e-06
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 43 4e-05
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.69
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.69
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 29 0.91
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 28 1.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 1.6
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.8
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.8
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 27 3.7
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 4.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.8
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 4.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa... 26 4.8
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 26 6.4
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 8.5
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 25 8.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 8.5
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 25 8.5
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 25 8.5
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 71.7 bits (168), Expect = 1e-13
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Frame = +1
Query: 151 LLSLIVLAVTLIFWWIFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 321
+++ I++ + IF R T++ +V L+G SDSGKT LF L Y + + T S++
Sbjct: 11 IVATIIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIE 70
Query: 322 ENIEEYITSNKTLKIVDLPGQERLRNKFFEQHKS--SAKGIVFVIDSINIQKEIRDVAEY 495
N E + +VDLPG R + + + K +VFV++S I +++ +V
Sbjct: 71 PN--EAVWKYGAW-LVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLM 127
Query: 496 LY-TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 666
L+ TIL + + LLI CNK D A+ ++ I+ LL+ E++ + K+ QL+S+
Sbjct: 128 LFDTIL--KCRKHHVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESI 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 199 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDL 375
FSR ++ + +L++GL +GKT + +L +Q T ++ N+E N + D+
Sbjct: 13 FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72
Query: 376 PGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLIL 555
GQ+++R + + + KG++FV+DS + I + + L+ I+ D + LL+L
Sbjct: 73 GGQDKIR-PLWRHYFTGTKGLIFVVDSAD-SNRISEARQELHRIISDR--EMRDCLLLVL 128
Query: 556 CNKQDQPLAKGSQVIKGLLE 615
NKQD P A I +L+
Sbjct: 129 ANKQDLPGALSPAQITDVLQ 148
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 58.0 bits (134), Expect = 1e-09
Identities = 39/144 (27%), Positives = 76/144 (52%)
Frame = +1
Query: 169 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITS 348
L+++ +F +F +R +L++GL +GKT + +L + T ++ N+E
Sbjct: 3 LSISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59
Query: 349 NKTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQ 528
N + + D+ GQ+++R + + + +GI+FV+DS N ++ I + E L +L + ++
Sbjct: 60 NISFTVWDVGGQDKIR-PLWRHYFQNTQGIIFVVDS-NDRERISEAHEELQRMLNEDELR 117
Query: 529 GNTTPLLILCNKQDQPLAKGSQVI 600
LL+ NKQD P A + I
Sbjct: 118 --DALLLVFANKQDLPNAMNAAEI 139
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 47.6 bits (108), Expect = 2e-06
Identities = 35/128 (27%), Positives = 61/128 (47%)
Frame = +1
Query: 229 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 408
VLL+GL ++GKT + L + + I I D+ GQ+ LRN F+
Sbjct: 19 VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FW 77
Query: 409 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 588
+ + S + I++V+DS++ + + L +L + + T +L+L NK D A
Sbjct: 78 KNYFESTEAIIWVVDSLD-DLRLEECRNTLQELLVEEKLL--FTSILVLANKSDVSGALS 134
Query: 589 SQVIKGLL 612
S+ I +L
Sbjct: 135 SEEISKIL 142
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/128 (25%), Positives = 55/128 (42%)
Frame = +1
Query: 229 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLPGQERLRNKFF 408
+L +GL ++GKT L L + ++ EE N DL G ++ R + +
Sbjct: 23 MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLW 81
Query: 409 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 588
+ GIV+++D + ++ AE + + + + P LIL NK D P A
Sbjct: 82 RDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR---VPFLILGNKIDAPGAIS 138
Query: 589 SQVIKGLL 612
+K L
Sbjct: 139 EDELKAAL 146
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 437 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 315
+P+A +L C + P RST++N L EV S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.69
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 551 IRRGVVFP*MIG-SHKIVYRYSATSLISFCILIESITNTIPLALL 420
I+ + F + G SH ++ + T+L SFC + ++N PL+LL
Sbjct: 601 IQENIYFGIVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFPLSLL 645
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 499 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 669
Y +C I++ N+T L + ++ + G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 28.3 bits (60), Expect = 1.2
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Frame = +1
Query: 211 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKIVD 372
++LR ++ +G GKT L R Y Q+ T+ + + + ++T L++ D
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 373 LPGQERLRNKFFEQ-HKSSAKGIVFVIDS----INIQKEIRDV-AEYLYTILCDPIIQGN 534
GQER R+ SS IV+ I + +N +K I DV AE ++ ++ GN
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVII--VLVGN 124
Query: 535 TTPL 546
T L
Sbjct: 125 KTDL 128
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +1
Query: 139 RYITLLSLIVLAVTLIFWWIFS 204
+YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 397 NKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPL 546
N F +H S KGIVFV D+ ++Q ++D ++L L ++G +PL
Sbjct: 363 NVFAARHLSEVKGIVFV-DAGSVQ-TLKDSGQFLSRFLL--FVRGWLSPL 408
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 226 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKIVDLP 378
S L G S +GKTLL LA + ++ ++ EY+ + +++ P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 26.6 bits (56), Expect = 3.7
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Frame = -2
Query: 734 NGENSKSLPSLPRNDPGV-------PS-DGSTDCS*FD-LVTRTKFISFSSSPLITWLPF 582
+G++S+SL +LP ND V PS G + F TR S P++ WLP
Sbjct: 69 HGDSSQSLSTLPNNDISVGEYVEPLPSVPGWLKQNIFSHFGTRLLHYLRSLFPIMNWLPR 128
Query: 581 ANGWSCLLHNIRRGVVFP*MIGSHKIVYRYSAT 483
N W+ L+++ G+ ++ + Y AT
Sbjct: 129 YN-WNWLVYDFIAGITVGCVVVPQGMSYAKVAT 160
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 373 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVAEYLYT 504
L + L N FFE+ K+ + ++++DS+ ++ EIR + + T
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFST 484
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/94 (22%), Positives = 45/94 (47%)
Frame = +1
Query: 64 KRKNSTMESEVVKEKIHTEPILNDPRYITLLSLIVLAVTLIFWWIFSRRYTLRNSVLLMG 243
+R +ST + + + T P+++ + L S++V A+ I+W+ R S L G
Sbjct: 58 RRFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWY-------ARRSNCLTG 110
Query: 244 LSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT 345
++++ ++ L F S++ I +Y+T
Sbjct: 111 INEA--EYIWKSLIPESIFYHFVSLQSFIRKYLT 142
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 473 SFCILIESITNTIPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 315
SFC+ + ++T + ALL+ + +L + P I ++L +I +FSF+
Sbjct: 523 SFCVFLVALTRVVSFALLIPIAFDLAI---IP--KVIIAIILIIIQGLVFSFM 570
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 538 TPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGTPGSFL 699
TP+ + ++ +P G +K LLEK ++ + +N S PS+G GSF+
Sbjct: 105 TPIPVSASRHHKPHHSG---LKNLLEKAMHPGHKSNANSPTSESPSKGF-GSFI 154
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 169 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 321
L + L F +FS+ R+ VLL G +GKTLL +A ++ F S+K
Sbjct: 671 LQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA-TELSLEFVSIK 720
>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 4.8
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Frame = +1
Query: 208 RYTLRNSVLLMGLSDSGKTLLFVR--LAYS---------QYRQTFTSMKE-NIEEYITSN 351
R TL VLL+GL D L F ++YS +R K+ N + + ++
Sbjct: 59 RLTLMEEVLLLGLKDKQGYLSFWNDSISYSLRGCILMELAFRGKLRMQKDVNRKRFPLAD 118
Query: 352 KTLKIVD--LPGQERLRNKFFEQHKSSAKGIVFVIDSI-----NIQK---EIRDVAEYLY 501
+ +++VD L G+ L H S + ID + N+ K ++R V E L
Sbjct: 119 RVVELVDEKLTGEVLLDEAIKMIHTSELMSVTSWIDLMSGETWNVMKIGYQLRQVRERLA 178
Query: 502 TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEG 681
L D I N +L + P+A S IK ++K + V V S ++ +D S
Sbjct: 179 KGLVDKGILRNEKKNFLLFDMPTHPIADTS--IKDSIKKRV--VSVLTSRVIE-IDNSPS 233
Query: 682 TP 687
P
Sbjct: 234 FP 235
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -1
Query: 495 VFCYISD-FFLYIDRINHKHNSLSTTLVLFKEFISQSLLSRQIDYFQCFIRSYILFNIF 322
+F + +D + L + + + + SLSTT+ LFK+ + + LS I Y +I NIF
Sbjct: 363 IFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIV-RITLSTFISYTWIPFLLFIFLNIF 420
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 229 VLLMGLSDSGKTLLF--VRLAYS 291
VLL+G DSGKT + +RL YS
Sbjct: 77 VLLLGAGDSGKTTIMKQMRLLYS 99
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.4 bits (53), Expect = 8.5
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Frame = +1
Query: 214 TLRNSVLLMGLSDSGKT---LLFVRLAYSQYRQT-----FTSMKENIEEYITSNKTLKIV 369
T+ ++L+G S GK+ L FV+ + YR++ F + I+E TS K L+I
Sbjct: 12 TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN-TSVK-LEIW 69
Query: 370 DLPGQERLRN 399
D GQER ++
Sbjct: 70 DTAGQERYKS 79
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 8.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 217 LRNSVLLMGLSDSGK----TLLFVRLAYSQYRQTFTSMK-ENIEEYITSNKTLKIVDLPG 381
+R VLLMG S SGK +++F R+ ++ E+ N L + D G
Sbjct: 1 MRKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGG 60
Query: 382 QERLRNKFFEQHKSSAKGIVF 444
QE F E + S+ + +F
Sbjct: 61 QE----AFMENYLSAQRDHIF 77
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 394 RNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTT 540
RNK H +V + +N ++E+ D+A+ L D +I GNTT
Sbjct: 293 RNKLNSPHPPV---LVKIAPDLN-EEELTDIADVLKKCKIDGVIVGNTT 337
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 163 IVLAVTLIFWWIF--SRRYTLRNSVLLMGL 246
+ +TL+F+W+F SRR + ++L+ G+
Sbjct: 48 VFFLLTLVFYWVFDLSRRRATQLTILVCGV 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,601
Number of Sequences: 5004
Number of extensions: 64096
Number of successful extensions: 247
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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