Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5142
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    47   3e-06
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    39   6e-04
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    36   0.008
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.0  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   3.5  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    26   4.7  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   6.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   6.1  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 104 TMESPRKFND--CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRH 274
           T  SP+      C F+   TCT G NC+F H+      +T+C  +Q+G C    +C L H
Sbjct: 29  TRPSPKSLQHVPCKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEH 88

Query: 275 M 277
           +
Sbjct: 89  V 89


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +2

Query: 89  RIAKNTMESPRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCK 265
           R  K    SP      Y+     C KG  C F HEP+    +T+C  +  G+C   + C 
Sbjct: 195 RFLKEVGNSPSAVYCRYYNANGICGKGAACRFVHEPTR---KTICPKFLNGRCNKAEDCN 251

Query: 266 LRHMELRKNRKQIPCYWENQPGGCRKIHCPFMH 364
           L H EL  + ++IP       G C   +C ++H
Sbjct: 252 LSH-EL--DPRRIPACRYFLLGKCNNPNCRYVH 281


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
 Frame = +2

Query: 56  RLISVLKFARVRIAKNTMESP------RKFNDCYFYYYSTCTKGDNCVFRHEPSALGCET 217
           RL+   K A+  + KNT E+        +   C F+   TCT G+NC F H  S      
Sbjct: 15  RLLDQKKSAKSTLPKNTPENGVSTVKNLQHVPCKFFRNGTCTAGENCPFSH--SLETERP 72

Query: 218 MCTAWQQGKCT-DKRCKLRH 274
           +C  + +G C    +C L H
Sbjct: 73  ICKYFLKGNCKFGPKCALSH 92


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 275 CDVVYSVYQYISPVARLCTLFHSLRLTAHGETHNYLPLY 159
           C VVYSV     P+A    LF  L L  +   +  LP++
Sbjct: 841 CQVVYSVISAFEPIA----LFQGLLLVGYSTMYTMLPVF 875


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 637 ETH-TFVEVDDEGVHGQRRERSASVVTRHTQQRAIQHHLSLLLPQ 506
           +TH   V++ D+GV G R ER   +V     +  +    S L+P+
Sbjct: 346 DTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPR 390


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 134 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRHMELRKNRKQIPC 310
           C  +    C KG+ C F HE +           ++G C++ + C   H++   +++   C
Sbjct: 54  CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLD--PSKQVGVC 111

Query: 311 YWENQPGGC 337
            W N  G C
Sbjct: 112 AWYNM-GFC 119


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 335 CRKIHCPFMHKNP---EARTDGIAPSQPAPPVHACLNES 442
           C  +     H+N        DG++P+ P PP++   N S
Sbjct: 485 CNNLEAMLSHQNGFNYNINNDGLSPNAPHPPINEQSNSS 523


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 10  VFQKLLFSINYFHE--LKVN*CFKICSSPDSEKYHGVST 120
           +F+K++F++ +FHE  L++   F      DS  YH V T
Sbjct: 452 IFEKMIFTLQHFHEDFLRLQNSFNCLL--DSGLYHQVFT 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,964
Number of Sequences: 5004
Number of extensions: 62692
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)