Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5142
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    38   0.005
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    38   0.005
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    38   0.009
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        33   0.20 
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    33   0.20 
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    33   0.20 
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    33   0.20 
U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    29   4.4  
U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 116 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 292
           PR   DC ++    C+KG+ C F H+ +    E +C     GKC+  + C+  H   R +
Sbjct: 2   PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 116 PRKFNDCYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCT-DKRCKLRHMELRKN 292
           PR   DC ++    C+KG+ C F H+ +    E +C     GKC+  + C+  H   R +
Sbjct: 2   PRHETDCRYFANGYCSKGNTCTFTHDVATRN-ENICHFNLVGKCSYGRACRFLHTRPRND 60


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +2

Query: 134 CYFYYYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCY 313
           C  +    C KGD C F HE             +   C+++ C  RH++     K  P Y
Sbjct: 82  CKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWY 141

Query: 314 WENQPGGCRK-IHCPFMHK 367
                G CR   +C   H+
Sbjct: 142 ---DRGFCRHGPYCKHRHR 157



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 158 CTKGDNCVFRHEPSALGCETMCTAWQQGKCTD-KRCKLRH-MELRKNRKQIPCYWENQPG 331
           C  G  C  RH         +C  W +G C    +C+  H  +L K  +   C++ ++  
Sbjct: 63  CPFGPTCPLRHIDGEKA--VVCKHWLRGLCKKGDQCEFLHEYDLTKMPE---CFFFSKYS 117

Query: 332 GCRKIHCPFMHKNPEAR 382
            C    CPF H +PE +
Sbjct: 118 ACSNRECPFRHIDPETK 134


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 158 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 247
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 158 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 247
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 256 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 287


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 158 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 247
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 252 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 283


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 158 CTKGDNCVFRHEPSAL--GCETMCTAWQQGKC 247
           CTKG+NC F +E  A   G  T C A +  KC
Sbjct: 141 CTKGENCTFSYENCAANRGVRTRCQACRFAKC 172


>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +2

Query: 134 CYFYYYSTCTKGDNCVFRHE-PSALGCETMCTAWQQGKC-TDKRCKLRHMELRKNRKQIP 307
           C F+    C  GDNC++ H+   +L    +C  +    C    +C + H E        P
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLHGE-------FP 223

Query: 308 CYWENQPGGCRKIHCPFMH 364
           C      G C    C F H
Sbjct: 224 CK-SFHKGQCNHDPCRFSH 241


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +1

Query: 418 CSCLPKREC----GGAATDGSHPAPCCARPGAASVAATKTSGAG 537
           C C P+       GGA   G+ P    A P AA  AA    GAG
Sbjct: 272 CPCPPRSAALGAGGGAEPAGAAPEAAAAAPEAAPEAAPAAEGAG 315


>U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B3.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +2

Query: 146 YYSTCTKGDNCVFRHEPSALGCETMCTAWQQGKCTDKRCKLRHMELRKNRKQIPCYWENQ 325
           YY+  T+ D   FR EP  +  +   T W +        KL  +E  K  K + C   + 
Sbjct: 118 YYTNDTEKDFLDFRSEPRKIIPKKFSTCWVENLAVPADIKL-FVEFWKRAKFVNCMNLHI 176

Query: 326 PGGCRKIHCP 355
           P    K+  P
Sbjct: 177 PRAGSKVRMP 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,141
Number of Sequences: 27780
Number of extensions: 385053
Number of successful extensions: 1152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)