Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5141
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   2.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.7  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   6.4  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 600 LYVRNMLSRRDKLLVQPWEDRRFKDHRLKVSERXXXXXXSNEFIDWISYGTV 445
           LY  + LS  D LL+Q   D + ++    VSE+       N F++++ YGT+
Sbjct: 536 LYDNDKLSSIDALLIQ---DSKLRE---MVSEKCISLSNFNVFLEYVFYGTL 581


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 397 RKQTDLYITYPVPKLPHCAIRYPINKLIRIGGLVLAFTYFQSVIFE 534
           RKQ ++ I + V +LP   + + + +L  I G +  F    SV F+
Sbjct: 76  RKQIEITINHLVSRLPSIVLPFLVRRLTTIAGRLDRFRSTVSVSFD 121


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 132  SFIVDVFRKYLLVLSLWSERSWSSCNIIAVGRC 230
            SFI++   +Y  +L+L  E SW S +I ++ +C
Sbjct: 1506 SFIINDNHEYSKMLNLGIEASWRSLSIDSLKKC 1538


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 517 QSVIFESPVFPRLNKQLISPRKHIPYVKSLD 609
           +SV FES   P +NK+ + P     Y +S D
Sbjct: 37  ESVRFESECIPTVNKRDLDPNAEGVYKRSFD 67


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 526 IFESPVFPRLNKQLISPRKHIPYV 597
           + ESPVF  +  QL+ P K+ PY+
Sbjct: 656 LIESPVFTYMRLQLLEPEKY-PYL 678


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 567 KLLVQPWEDRRFKDHRLKVSE 505
           KL+   +EDRRF D  +K+ E
Sbjct: 579 KLITGDYEDRRFNDGLIKIRE 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,987
Number of Sequences: 5004
Number of extensions: 54229
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)