Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5141
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ448593-1|ABD93323.1|  375|Homo sapiens TATA box binding protei...    30   10.0 
BC117185-1|AAI17186.1|  375|Homo sapiens TATA box binding protei...    30   10.0 
BC117159-1|AAI17160.1|  375|Homo sapiens TATA box binding protei...    30   10.0 
BC037207-1|AAH37207.1|  738|Homo sapiens KIAA1600 protein protein.     30   10.0 
AY457923-1|AAR24281.1|  375|Homo sapiens TBP-related factor 3 pr...    30   10.0 
AL137025-4|CAH70000.1|  738|Homo sapiens novel protein protein.        30   10.0 
AL137025-3|CAH69999.1|  765|Homo sapiens novel protein protein.        30   10.0 
AB046820-1|BAB13426.2|  741|Homo sapiens KIAA1600 protein protein.     30   10.0 

>DQ448593-1|ABD93323.1|  375|Homo sapiens TATA box binding protein
           like 2 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 448 CAIRYPINKLIRIGGLVLAFTYFQSVIFESPVFPRLNKQLISPR 579
           C +R+PI    R+ GLVL    F S  +E  +FP L  +++ PR
Sbjct: 299 CDVRFPI----RLEGLVLTHQQFSS--YEPELFPGLIYRMVKPR 336


>BC117185-1|AAI17186.1|  375|Homo sapiens TATA box binding protein
           like 2 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 448 CAIRYPINKLIRIGGLVLAFTYFQSVIFESPVFPRLNKQLISPR 579
           C +R+PI    R+ GLVL    F S  +E  +FP L  +++ PR
Sbjct: 299 CDVRFPI----RLEGLVLTHQQFSS--YEPELFPGLIYRMVKPR 336


>BC117159-1|AAI17160.1|  375|Homo sapiens TATA box binding protein
           like 2 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 448 CAIRYPINKLIRIGGLVLAFTYFQSVIFESPVFPRLNKQLISPR 579
           C +R+PI    R+ GLVL    F S  +E  +FP L  +++ PR
Sbjct: 299 CDVRFPI----RLEGLVLTHQQFSS--YEPELFPGLIYRMVKPR 336


>BC037207-1|AAH37207.1|  738|Homo sapiens KIAA1600 protein protein.
          Length = 738

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 PKLPHCAIRYPINKLIRIGGLVLA 504
           P LPH  +  P+ KLIR+ G VLA
Sbjct: 121 PLLPHINVHRPVQKLIRLCGEVLA 144


>AY457923-1|AAR24281.1|  375|Homo sapiens TBP-related factor 3
           protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 448 CAIRYPINKLIRIGGLVLAFTYFQSVIFESPVFPRLNKQLISPR 579
           C +R+PI    R+ GLVL    F S  +E  +FP L  +++ PR
Sbjct: 299 CDVRFPI----RLEGLVLTHQQFSS--YEPELFPGLIYRMVKPR 336


>AL137025-4|CAH70000.1|  738|Homo sapiens novel protein protein.
          Length = 738

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 PKLPHCAIRYPINKLIRIGGLVLA 504
           P LPH  +  P+ KLIR+ G VLA
Sbjct: 121 PLLPHINVHRPVQKLIRLCGEVLA 144


>AL137025-3|CAH69999.1|  765|Homo sapiens novel protein protein.
          Length = 765

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 PKLPHCAIRYPINKLIRIGGLVLA 504
           P LPH  +  P+ KLIR+ G VLA
Sbjct: 121 PLLPHINVHRPVQKLIRLCGEVLA 144


>AB046820-1|BAB13426.2|  741|Homo sapiens KIAA1600 protein protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 10.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 433 PKLPHCAIRYPINKLIRIGGLVLA 504
           P LPH  +  P+ KLIR+ G VLA
Sbjct: 97  PLLPHINVHRPVQKLIRLCGEVLA 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,062,828
Number of Sequences: 237096
Number of extensions: 1784403
Number of successful extensions: 6308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6308
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)