Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5141
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.74 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.1  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 123 NVISFIVDVFRKYLLVLSLWSERSWSSC-NIIAVGRCYTPHEQSPL 257
           NV   ++  +  +   +S+ SE  W SC N      C  P+++  L
Sbjct: 74  NVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSL 119


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 138 IVDVFRK-YLLVLSLWSERSWSSCNI 212
           I+DV  K  LL+ +LW +  W+  N+
Sbjct: 60  IIDVDEKNQLLITNLWLKLEWNDVNM 85


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 198 SSCNIIAVGRCYTPHEQSPLPP 263
           +S  +   G    P EQ PLPP
Sbjct: 25  NSGELFKAGSAEQPKEQEPLPP 46


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 544  FPRLNKQLISPRKHIPYVKSLDI*EFSKIAGK 639
            +PR+N    + + HIP  KS+ +      AG+
Sbjct: 1474 YPRINPDNHNEKLHIPKDKSVSVLSRENEAGQ 1505


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 667 PRATFTTNQLINMNCRY 717
           PR  FTT QL+++  ++
Sbjct: 12  PRTPFTTQQLLSLEKKF 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,433
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)