Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5139
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine re...    28   4.8  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        27   8.4  
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        27   8.4  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine
           receptor, class t protein42, isoform a protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 134 FRFKRPLVQYNETYTCILGSRHQLHQSGASI 42
           FRFK+P+     T   ++G  HQ H   +S+
Sbjct: 282 FRFKKPINTRTTTTVSVVGHGHQHHHHSSSL 312


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 316 SIMESGKLYFLSQTHHVWAWL 378
           S+ E+  L  L  T HVW+WL
Sbjct: 207 SLTETENLLILKSTWHVWSWL 227


>Z83127-4|CAB05631.1|  872|Caenorhabditis elegans Hypothetical
           protein T23F6.4 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 493 IKNIPALCSEYQSSKFNPKY 434
           +KN+P+ C+E Q  KF  KY
Sbjct: 7   VKNLPSTCTEQQLRKFFEKY 26


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 532 PPTRPYNVWQLKSIKNIPALCSEYQSSKFNP 440
           PPT+PY  W+++   N      E    +F P
Sbjct: 22  PPTQPYRSWEVRDDSNAYVYLEEESPYRFMP 52


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 265 AEIKFKGMTGKNSTNRDSIMESGKLYFL-SQTHHVWAWLN 381
           AE+ +KG+      +RD   +S KLY L SQ  H+ A+ N
Sbjct: 406 AELHYKGVPTNKGVHRD-FKKSVKLYQLASQNGHILAYYN 444


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 265 AEIKFKGMTGKNSTNRDSIMESGKLYFL-SQTHHVWAWLN 381
           AE+ +KG+      +RD   +S KLY L SQ  H+ A+ N
Sbjct: 406 AELHYKGVPTNKGVHRD-FKKSVKLYQLASQNGHILAYYN 444


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 265 AEIKFKGMTGKNSTNRDSIMESGKLYFL-SQTHHVWAWLN 381
           AE+ +KG+      +RD   +S KLY L SQ  H+ A+ N
Sbjct: 406 AELHYKGVPTNKGVHRD-FKKSVKLYQLASQNGHILAYYN 444


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 DSIMESGKLYFLSQTHHVWAWLNH 384
           D++ E  KL  L  T HVW+ L+H
Sbjct: 194 DALEEKVKLTLLQSTWHVWSVLDH 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,165
Number of Sequences: 27780
Number of extensions: 223595
Number of successful extensions: 489
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)