Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5138
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.13 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    28   0.92 
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.8  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   3.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.9  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   8.6  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 114 PPACKILHNVLLFCLKHNKYRL 179
           PP+C++ +N+LL C   N++RL
Sbjct: 338 PPSCEVSYNLLLTCRSSNRFRL 359


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 140 IV*NFTRGRTSNFSPLGAHTIFSPTRPKVRGVPSWGPRGEAL 15
           +V NF+   TS FSP+ +  +FS     + G  S  P GE L
Sbjct: 254 VVRNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSGEML 295


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 193 VHIPTIPLFNGQEQLSGYRNNIVKQPFA 276
           +HIP +  FNG+E +S +  +++K  FA
Sbjct: 578 LHIPIVIWFNGEEPIS-FTEDLLKSAFA 604


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 508 NYPISDTNKTYHIKLNILDRGVKGYLVF 591
           N  I+DTN T  I +   DRG  G+L F
Sbjct: 405 NVVINDTNTTTTIVVKEKDRGGAGFLTF 432


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247  RNNIVKQPFA*YCLSTILSPQQM 315
            +NN + +PF  + LST LSP  M
Sbjct: 1370 QNNFISKPFNVHTLSTTLSPWAM 1392


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 289 LSNIRQMVVLRCYFYSLKVVLDH*IMEW 206
           LS  R  + L  YFY L++  ++ I EW
Sbjct: 611 LSMTRHFLQLLGYFYQLEIAEENAIQEW 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,933
Number of Sequences: 5004
Number of extensions: 56279
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)