Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5138
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110393-1|AAI10394.1|  439|Homo sapiens EMI domain containing 2...    30   5.5  
BC109254-1|AAI09255.1|  439|Homo sapiens EMI domain containing 2...    30   5.5  
AJ416091-1|CAC94778.1|  441|Homo sapiens putative emu2 protein p...    30   5.5  
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ...    30   7.3  
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ...    30   7.3  
AK128457-1|BAC87449.1|  205|Homo sapiens protein ( Homo sapiens ...    30   7.3  
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.              30   7.3  

>BC110393-1|AAI10394.1|  439|Homo sapiens EMI domain containing 2
           protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRGE 102
           PP    P GP  GTP + GL GE+    P GE
Sbjct: 313 PPGPRGPPGPP-GTPGSQGLAGERGTVGPSGE 343


>BC109254-1|AAI09255.1|  439|Homo sapiens EMI domain containing 2
           protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRGE 102
           PP    P GP  GTP + GL GE+    P GE
Sbjct: 313 PPGPRGPPGPP-GTPGSQGLAGERGTVGPSGE 343


>AJ416091-1|CAC94778.1|  441|Homo sapiens putative emu2 protein
           protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRGE 102
           PP    P GP  GTP + GL GE+    P GE
Sbjct: 315 PPGPRGPPGPP-GTPGSQGLAGERGTVGPSGE 345


>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
           protein.
          Length = 1690

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRG 99
           PP    P+GP LG P   GL GEK +   RG
Sbjct: 69  PPGPQGPIGP-LGAPGPIGLSGEKGMRGDRG 98


>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4
           chain protein.
          Length = 1690

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRG 99
           PP    P+GP LG P   GL GEK +   RG
Sbjct: 69  PPGPQGPIGP-LGAPGPIGLSGEKGMRGDRG 98


>AK128457-1|BAC87449.1|  205|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46600 fis, clone THYMU3047144. ).
          Length = 205

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 4   LPPARASPLGPQLGTPRTFGLVGEKIVCAPRGE-KLDVLPRVKFYTMYYC 150
           +PP +A+ L  Q       G++  + +  PRG+ KL VLP  +    Y C
Sbjct: 6   IPPCKAASLSEQEQVRGECGMMTAQGILGPRGKSKLPVLPDPRLICRYMC 55


>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
          Length = 1324

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   PPARASPLGPQLGTPRTFGLVGEKIVCAPRG 99
           PP    P+GP LG P   GL GEK +   RG
Sbjct: 69  PPGPQGPIGP-LGAPGPIGLSGEKGMRGDRG 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,569,253
Number of Sequences: 237096
Number of extensions: 2051492
Number of successful extensions: 6808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6808
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)