Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5137
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    24   6.0  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    24   6.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.9  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   7.9  

>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  CNSVQIWRAAVAFNVKQLVSCS 91
           C+  ++W AAVA NV     CS
Sbjct: 194 CDGARLWDAAVASNVSIKEYCS 215


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 232 YTLKFSELFLTSLQKQK*TETNAPFTRSHY 143
           +T +FSE+FL S +  +    N P  +S +
Sbjct: 112 WTSEFSEVFLNSSENDRFRNLNQPLKQSFF 141


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 293  PQFRFDANANARVNSSTTLH 352
            P++  DANA   VNS  T+H
Sbjct: 1475 PRYLDDANAFENVNSYNTIH 1494


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 56  VAFNVKQLVSC--SPLPNAESVRPTERDGPSVVRTS 157
           VAFN  +++S   SPLP++ +    +   PS   TS
Sbjct: 189 VAFNTIRILSAIPSPLPSSSTSSWADEPSPSSTETS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,224,104
Number of Sequences: 5004
Number of extensions: 20190
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)