Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5137
         (354 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053610-1|AAH53610.1|  272|Homo sapiens protein kinase, AMP-act...    29   4.1  
AL356378-1|CAH72644.1|  272|Homo sapiens protein kinase, AMP-act...    29   4.1  
AJ224538-1|CAA12030.1|  272|Homo sapiens AMP-activated protein k...    29   4.1  
AF504543-1|AAM74153.1|  272|Homo sapiens AMPK beta-2 subunit pro...    29   4.1  

>BC053610-1|AAH53610.1|  272|Homo sapiens protein kinase,
           AMP-activated, beta 2 non-catalytic subunit protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 107 ESVRPTERDGPSVVRTSEGG 166
           +SV+PT++  P+V+R SEGG
Sbjct: 68  DSVKPTQQARPTVIRWSEGG 87


>AL356378-1|CAH72644.1|  272|Homo sapiens protein kinase,
           AMP-activated, beta 2 non-catalytic subunit protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 107 ESVRPTERDGPSVVRTSEGG 166
           +SV+PT++  P+V+R SEGG
Sbjct: 68  DSVKPTQQARPTVIRWSEGG 87


>AJ224538-1|CAA12030.1|  272|Homo sapiens AMP-activated protein
           kinase beta 2 subunit protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 107 ESVRPTERDGPSVVRTSEGG 166
           +SV+PT++  P+V+R SEGG
Sbjct: 68  DSVKPTQQARPTVIRWSEGG 87


>AF504543-1|AAM74153.1|  272|Homo sapiens AMPK beta-2 subunit
           protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 107 ESVRPTERDGPSVVRTSEGG 166
           +SV+PT++  P+V+R SEGG
Sbjct: 68  DSVKPTQQARPTVIRWSEGG 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,421,988
Number of Sequences: 237096
Number of extensions: 751280
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)