Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5137
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 206 KQLAKL*SVNKCLFK*IKLVQN 271
           K++ K+ S+N C+F    +V N
Sbjct: 225 KRVTKMSSINPCIFDNATIVNN 246


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 105 PNRYDRPNGTG 137
           PNR D  NGTG
Sbjct: 10  PNRVDFSNGTG 20


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 82  KLLALAECRIGTTDRTGRAKRSANE*R 162
           K  +++EC +GT   T     S N  R
Sbjct: 169 KRRSVSECSLGTASSTSSTASSRNSDR 195


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 65  NVKQLVSCSPLPNAESVRPTERDGPSV 145
           N+  +    PLPN     PT    PS+
Sbjct: 422 NMSNMSGMPPLPNMPGSMPTMPTMPSM 448


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 117 RTDSAFGKGEQLTSCLTLNATAA 49
           R +SAF     + SCL + AT A
Sbjct: 510 RWNSAFAIAPAVISCLGIVATMA 532


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 147 CERVKGAFVSVYF 185
           C  VKG+ V +YF
Sbjct: 688 CATVKGSAVDMYF 700


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 117 RTDSAFGKGEQLTSCLTLNATAA 49
           R +SAF     + SCL + AT A
Sbjct: 600 RWNSAFAIAPAVISCLGIVATMA 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,062
Number of Sequences: 438
Number of extensions: 1386
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)