Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5136
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   157   2e-39
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   8.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  157 bits (380), Expect = 2e-39
 Identities = 85/201 (42%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
 Frame = +1

Query: 91  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 264
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 265 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 444
           NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164

Query: 445 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 624
                              S  Q+PLF  A+ IT+          AG + +L +DRNLNT
Sbjct: 165 TLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNT 224

Query: 625 SFFDPAGGGDPILYQHLF*FF 687
           SF+ P GGGDP+LYQHLF FF
Sbjct: 225 SFYAPEGGGDPVLYQHLFWFF 245



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +3

Query: 699 EVYILILPGFGIISHII 749
           EVYILI+P FG++SHII
Sbjct: 249 EVYILIMPAFGVVSHII 265


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 116 INDP-GFPNSARIKSLKDVPIIPDQIPKIKYNVPXPR 9
           +NDP   P+S+R++ ++++ +  D+IP+   N   PR
Sbjct: 268 VNDPLKSPSSSRLR-IRNITLCADKIPRPLLNSKLPR 303


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 TPTPLPYIINFKKNCRKWCRNRMNS 356
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,919
Number of Sequences: 5004
Number of extensions: 42667
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)