Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5135
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   5.2  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    24   6.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   9.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    24   9.1  

>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 199 SYPNSNKTKTRLLESTRTEFKVHRHCWCPRGQASSQIRFWWAASRRLHNYC*LCY 35
           S PN   + + L E+   +    +HC+C   + +    ++ + + + +N C  CY
Sbjct: 212 STPNQKPSLSNLHENNIDQSDSPQHCYCCGNKFNES--YYQSQTAQKYNVCISCY 264


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 121 NNDDGP*IQYEWILTDEFLSCCCSDKNRLWL 213
           NNDD P I+     T EFL    ++   L+L
Sbjct: 103 NNDDAPTIRCALNCTQEFLLSFSNESKELYL 133


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -3

Query: 325  YSSVRAIFVKRGTKFLLHVLIYRYVHFNHGSRFIHV**ARGDSYPNSNKTKTRLLESTRT 146
            +  VR    +R  + +++ L  R+  F++ +RFIH+    G+   +  K K  ++E    
Sbjct: 1051 FYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHM-IIEGELVVSKKKKKDLIVELKEK 1109

Query: 145  EFK 137
            +F+
Sbjct: 1110 KFQ 1112


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 77  PPKPNLR*SLASGAPTM 127
           PPKP++  S+AS  PT+
Sbjct: 7   PPKPSISPSIASSFPTV 23


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 288  VPLFTKIARTEEYEISHTYREYTENANLF 374
            + +F K   T+EY++    ++   N NL+
Sbjct: 946  ITVFLKFPDTQEYQLHFNRKKIISNCNLY 974


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,642
Number of Sequences: 5004
Number of extensions: 31735
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)