Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5135
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 29 1.2
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581... 29 1.6
10_01_0013 + 154098-154101,154513-154673,154773-154847,155071-15... 28 2.1
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018... 28 2.1
05_07_0125 + 27861368-27862282 28 2.8
05_05_0043 + 21816393-21816749 27 4.9
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 27 4.9
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 27 6.5
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 27 6.5
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 26 8.6
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 26 8.6
>03_02_0557 +
9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 220 HV*TESRD*NVHIYILIREAKTLYPFLRKLRERRSMKFP 336
H S++ N HI++ R ++LY KLRE + KFP
Sbjct: 82 HAGVTSKNQNGHIFL--RNGRSLYELFHKLREVPAEKFP 118
>06_01_0778 +
5816588-5816885,5817554-5817615,5818764-5818905,
5819969-5820064,5820147-5820266,5820401-5820663,
5821507-5821617
Length = 363
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 359 LCIFSISVGNFILLRSRNFRKKGYKVFA 276
LC F++S +F+L RN KK KVFA
Sbjct: 102 LCPFTVSFDHFLLSEERNKVKKLEKVFA 129
>10_01_0013 +
154098-154101,154513-154673,154773-154847,155071-155571,
155873-156214,158107-158234,158296-158342,160117-160196,
160569-160654,161409-161556,161947-162082,162160-162488,
162953-163169,164547-164572
Length = 759
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 205 GDSYPNSNKTKTRLLESTRTEFKVHRHCWCP--RGQASS 95
G+S+PNS+ R E + T + + C C RGQ +S
Sbjct: 594 GESFPNSSSVDGRGEEGSATPYAAYATCGCARRRGQMAS 632
>02_02_0501 -
10999203-10999754,11000724-11001460,11001461-11001836,
11001917-11001946,11002718-11002912,11003604-11004149
Length = 811
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 295 RGTKFLLHVLIYRYVHFNHGSRFIHV**ARGDSY 194
RG L+H +I VHF H +R I+ A G Y
Sbjct: 745 RGRLLLIHGMIDENVHFRHTARLINSLMAEGKPY 778
>05_07_0125 + 27861368-27862282
Length = 304
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 224 YEPRAVIKMYISIY*YVKQKLCTPFYEN-CANGGV*NFPHL*RIYRE 361
Y R +I Y + + ++ C F EN C GG NF H+ +I RE
Sbjct: 134 YSGRPIIVEYSPVTDF-REATCRQFEENSCNRGGYCNFMHVKQIGRE 179
>05_05_0043 + 21816393-21816749
Length = 118
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 64 AYSLPTKTESAMKPGLGGTNNDDG 135
A SLP +T SA LGG DDG
Sbjct: 12 APSLPCRTRSATTAALGGQIEDDG 35
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = -1
Query: 345 YKCGKFHTPPFAQFS*KGVQSFCFTY*YIDMYILITALGSYMYNEPEAILIRTATRQKLV 166
Y G H + K + + + M +L+ A S+ Y +PE I LV
Sbjct: 871 YAFGVLHITTLVPYCRKLIVHATLSNNRVGMSVLLDAANSFGYVDPEVICPALNVLVNLV 930
Query: 165 C*NPLVLNSRS 133
C P + N S
Sbjct: 931 CPPPSISNKSS 941
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 361 FSVYSL*V-WEISYSSVRAIFVKRGTKFLLHVLIYRYVHFNHGSR 230
FSV+ + V W I +F + +LH++ YRYV F+ G +
Sbjct: 191 FSVFDVPVFWPILLFYWVVLFTVTMKRQILHMIKYRYVPFSFGKQ 235
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 361 FSVYSL*V-WEISYSSVRAIFVKRGTKFLLHVLIYRYVHFNHGSRF 227
FSV+ + V W I +FV + ++H++ Y+YV F+ G ++
Sbjct: 214 FSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFSVGKQY 259
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 28 SFSNTINNNCVVAYSLPTKTESAMKPGLGGTNNDDGP*IQYEWILTDEFLSCCCSDKNRL 207
SF N++ + VA++ + + + + G++ D+G I + ++T +S C+ L
Sbjct: 196 SFLNSLAESGAVAHNEDDRIHNHVPVKIFGSHKDEGYAIDWSPLVTGRLVSGDCNKCIHL 255
Query: 208 W 210
W
Sbjct: 256 W 256
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 288 VPLFTKIARTEEYEISHTYREYT 356
VPL+ K +E+ I++T++EYT
Sbjct: 479 VPLYIKDMHGKEWVINYTWKEYT 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,228
Number of Sequences: 37544
Number of extensions: 193259
Number of successful extensions: 412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -