Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5125
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   0.91 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   3.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 326 RHLDIENRMIVTNSPFYLKRRLRP*RPWNATPASTTTLTD 207
           RH+D++  ++  +S F+ +RR R  R   +   ST   TD
Sbjct: 321 RHVDVDPPIVEEHSSFFRRRRWRRSRSQESASRSTIRSTD 360


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 266 RLRP*RPWNATPASTTTLTDPGC*SLSTSLKVLQKSRSPLLKGKVTSTII 117
           RL P RP    PAS+++       ++ T+     +  SPL+  K T  II
Sbjct: 250 RLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTDNII 299


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 251 RPWNATPASTTTLTDPGC*SLSTSLKVLQKSRSPLLKG 138
           +P ++TP S+++       +LSTS +V+ +  S LL G
Sbjct: 477 QPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSG 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,479
Number of Sequences: 5004
Number of extensions: 35826
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)