Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5125
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-1|CAA86661.1|  799|Caenorhabditis elegans Hypothetical pr...    28   3.3  
X16473-1|CAA34493.1|  799|Caenorhabditis elegans zyg-11 protein ...    28   3.3  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    27   7.6  

>Z46676-1|CAA86661.1|  799|Caenorhabditis elegans Hypothetical
           protein C08B11.1 protein.
          Length = 799

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 227 STTTLTDPGC*SLSTSLKVLQKSRSPLLKGKVTSTIIFLLMLFNKYVNKSTN 72
           S+T +TD  C S   +L+VL      +LKG VT T+  L  L    +++  N
Sbjct: 191 SSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLDISRKVN 242


>X16473-1|CAA34493.1|  799|Caenorhabditis elegans zyg-11 protein
           protein.
          Length = 799

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 227 STTTLTDPGC*SLSTSLKVLQKSRSPLLKGKVTSTIIFLLMLFNKYVNKSTN 72
           S+T +TD  C S   +L+VL      +LKG VT T+  L  L    +++  N
Sbjct: 191 SSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLDISRKVN 242


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 285 TFLFEAEAASLTPLECNTCFHNYTHRSWLLITKYE 181
           T + E E   L  L C   FH +  R W+++ K +
Sbjct: 318 TKMVEDEDEKLYKLSCGHVFHEFCIRGWVVVGKLQ 352


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 496 NQSKLVIKERNVFVWLQNMVIIY 428
           N  K+ + E  VF W++N+ +IY
Sbjct: 298 NTGKIEMTEHPVFTWVENVCVIY 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,868
Number of Sequences: 27780
Number of extensions: 196928
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)