Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5124
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   2.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    24   7.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   7.4  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 226 WVQRMALSCSRLHGNTSCLFVLSL 155
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 GSTPRCPSGTPSMSPQKGSPASQPY 81
           GS+P    G+ S SP+K +  S P+
Sbjct: 127 GSSPTSSYGSGSASPRKSTVISSPF 151


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 193  LHGNTSCLFVLSLAVLRAVQA-ELHQCHHRRDLQLHSHTH*IEIERWQP*AAEEIHHTRK 17
            L+ +   +++ +L  L++ +A +  +C     L L+SHT    + R     AE+ HH   
Sbjct: 835  LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 894

Query: 16   NVC 8
              C
Sbjct: 895  LSC 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,098
Number of Sequences: 5004
Number of extensions: 33313
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)