Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5122
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-14|AAK39276.2|  390|Caenorhabditis elegans Kinase, glh-...    30   1.4  
AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical ...    30   1.4  
U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z50874-10|CAA90770.1|  302|Caenorhabditis elegans Hypothetical p...    28   5.8  
AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase, glh-b...    28   5.8  
AC006617-3|AAF39764.1|  322|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF036706-14|AAK39276.2|  390|Caenorhabditis elegans Kinase,
           glh-binding protein 1 protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 383 KHALNGFLQLKNIKHPNIIRLFRKYS 460
           K A   F+ L  IKHPNIIRL   ++
Sbjct: 80  KRAYREFILLTTIKHPNIIRLLNAFT 105


>AC087081-3|AAK66040.1|  240|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.16 protein.
          Length = 240

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 564 FVLKNHQRNKNLSLKVPVSALSKKKSSLIRHLNTELYFLNKRI--ILGCLIFFNCK 403
           F L NH +NK  S+K  + AL  KK        T++YF   R   IL  L +FN K
Sbjct: 53  FNLTNHTKNKRDSMKSLIKALKTKKFVCA----TKIYFYQFRFNEILSILPYFNPK 104


>U43283-7|AAC69018.1|  537|Caenorhabditis elegans Hypothetical
           protein T25G12.2 protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 552 NHQRNKNLSLKVPVSALSKKKSSLIRHLNTELYFLNKRIILGCLIFFN 409
           +H  ++ +   +P+S   + + +  RHL ++ +FLNK  I   L  FN
Sbjct: 405 HHDHHQEIEASIPLSLSRRTRKTARRHLVSKEHFLNKVKIEAALERFN 452


>Z50874-10|CAA90770.1|  302|Caenorhabditis elegans Hypothetical
           protein R10E4.11 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 377 KQKHALNGFLQLKNIKHPNIIRLFRKYSSVF 469
           K ++A N FL+ K+  HP ++   +KY  +F
Sbjct: 18  KPEYAFNNFLK-KDYVHPEVVETNKKYDDIF 47


>AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase,
           glh-binding protein 2 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 383 KHALNGFLQLKNIKHPNIIRLFRKYS 460
           + A   F+ L  +KHPNIIRL   ++
Sbjct: 71  RRAYREFILLTTLKHPNIIRLLNAFT 96


>AC006617-3|AAF39764.1|  322|Caenorhabditis elegans Hypothetical
           protein C39B5.8 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 564 FVLKNHQRNKNLSLKVPVSALSKKKSSLIRHLNTELYFLNKRIILGCLIFF 412
           FVL+N  RNKN  LK  V+ L    S  ++ +N  L +L    IL  L  F
Sbjct: 133 FVLQNFTRNKNEVLKSLVNVLENGGSVHVKKIN--LLYLTFNEILSILPCF 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,040
Number of Sequences: 27780
Number of extensions: 239825
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)