Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5120
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   4.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.2  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    24   8.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    24   8.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   8.2  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 280 DRVTYAVTYVANEGGFQPSAPHIP 351
           +R+ Y+    + +GG   +APH+P
Sbjct: 763 ERLDYSCALFSPDGGLVANAPHVP 786


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 412 FQMNEYFWTRCWGLFG*LK 356
           F+ +EY W  CW  +G L+
Sbjct: 58  FRQDEYSWNDCWMRWGQLR 76


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 96  WGSDSYGDEESDNEE 52
           WG +   +EESDNE+
Sbjct: 236 WGDERSDEEESDNEQ 250


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 145  IGVEGYNTGYETCNGIKAQETGQLKNIGTENEALEVRGEFAYMGPDR 285
            +GVE  +TG   C G   +E        T+N  + + G+   +G DR
Sbjct: 983  LGVEMSSTGEVACFGKDVKEAYWAALQSTQNFKIPLPGQGILLGGDR 1029


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 270 VRKFSPDLKSFVFSANVLQLTGFLSLDSVAGFIAGV 163
           V+KF PD    +F +N LQ     +++    FI G+
Sbjct: 79  VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGI 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,859
Number of Sequences: 5004
Number of extensions: 22503
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)